Locus 7478

Sequence ID	X_DroMel_CAF1
Location	18,662,533 – 18,662,626
Length	93
Max. P	0.973312

overview

Window 6

Location	18,662,533 – 18,662,626
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	95.70
Mean single sequence MFE	-19.92
Consensus MFE	-17.72
Energy contribution	-18.12
Covariance contribution	0.40
Combinations/Pair	1.00
Mean z-score	-1.73
Structure conservation index	0.89
SVM decision value	1.71
SVM RNA-class probability	0.973312
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18662533 93 + 22224390
GUAUAGAGCAUAUUGAACUUAUAGAGCAUAUAGAAAAAUAGGAACGAUGUGCCGAUGUGUAGGGCGUGCGUACAAAAUGUGUACAUGAAACCA
.((((..((((((((..(((((....(.....)....)))))..))))))))...))))..((.((((..(((.....)))..))))...)). ( -20.60)
>DroSec_CAF1 7499 93 + 1
GUAUAGAGCAUAUUGAACUUAUAGAGCAUAUAGAAAAAUAGGAACGAUGUGCCGAUGUGUAGGGCGUGCGUACAAAAUGUGUACAUGAAACCA
.((((..((((((((..(((((....(.....)....)))))..))))))))...))))..((.((((..(((.....)))..))))...)). ( -20.60)
>DroSim_CAF1 5685 93 + 1
GUAUAGAGCAUAUUGAACUUAUAGAGCAUAUAGAAAAAUAGGAACGAUGUGCCGAUGUGUAGGGCGUGCGUACAAAAUGUGUACAUGAAACCA
.((((..((((((((..(((((....(.....)....)))))..))))))))...))))..((.((((..(((.....)))..))))...)). ( -20.60)
>DroEre_CAF1 7824 85 + 1
--------CAUAUUGAACUUAUAUAGCAUAUAGAAAAAUAGGAACGAUGAGCCGAUGUGUAGGGCGUGCGUACAAAAUGUGUACAUGAAACCA
--------(((((((..(((((....(.(((......))).)....))))).)))))))..((.((((..(((.....)))..))))...)). ( -17.20)
>DroYak_CAF1 7765 93 + 1
GUAUAGAGCAUAUUGAACUUAUAGAGCAUAUAGAAAAAUAGGAACGAUGUGCCGAUGUGUAGGGCGUGCGUACAAAAUGUGUACAUGAAACCA
.((((..((((((((..(((((....(.....)....)))))..))))))))...))))..((.((((..(((.....)))..))))...)). ( -20.60)
>consensus
GUAUAGAGCAUAUUGAACUUAUAGAGCAUAUAGAAAAAUAGGAACGAUGUGCCGAUGUGUAGGGCGUGCGUACAAAAUGUGUACAUGAAACCA
.......((((((((..(((((....(.....)....)))))..)))))))).........((.((((..(((.....)))..))))...)). (-17.72 = -18.12 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:55 2006