Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,662,194 – 18,662,314 |
Length | 120 |
Max. P | 0.853057 |
Location | 18,662,194 – 18,662,314 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.30 |
Mean single sequence MFE | -26.60 |
Consensus MFE | -19.63 |
Energy contribution | -19.63 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.95 |
Structure conservation index | 0.74 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.853057 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18662194 120 - 22224390 CAUAGAAAGCACAAAGAGAAUUCAGAUAUUCAGAUAAUCGGAUAUUCGGAUAUUCCGAUAUUCGGAUAUUCCGAAAUUCGGAUAUCCCAUAUAAAGAGAUUGUUUACCAGCAAAACGGUU ........((.......((((......))))((((((((((((((.(((.....)))))))))((((((.(((.....)))))))))..........))))))))....))......... ( -31.00) >DroSec_CAF1 7194 102 - 1 CAUAGAAAGCACAAAGAGAAUUCAUAUAUUCAGAUAAUCGGAUAUUCGGAUAUUCCGAUAUUC----------------GGAUAUCCCAUAUAAA--GAUUGUUUACCAGCAAAUCGGUU ........((.......((((......))))((((((((((((((((((((((....))))))----------------))))))))........--))))))))....))......... ( -24.40) >DroSim_CAF1 5375 102 - 1 CAUAGAAAGCACAAAGAGAAUUCAGAUAUUCAGAUAAUCGGAUAUUCGGAUAUUCCGAUAUUC----------------GGAUAUCCCAUAUAAA--GAUUGUUUACCAGCAAAUCGGUU ........((.......((((......))))((((((((((((((((((((((....))))))----------------))))))))........--))))))))....))......... ( -24.40) >consensus CAUAGAAAGCACAAAGAGAAUUCAGAUAUUCAGAUAAUCGGAUAUUCGGAUAUUCCGAUAUUC________________GGAUAUCCCAUAUAAA__GAUUGUUUACCAGCAAAUCGGUU ........((.......((((......))))((((((((((((((.(((.....)))))))))................((.....)).........))))))))....))......... (-19.63 = -19.63 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:54 2006