Locus 7476

Sequence ID X_DroMel_CAF1
Location 18,661,551 – 18,661,660
Length 109
Max. P 0.595682
window12264

overview

Window 4

Location 18,661,551 – 18,661,660
Length 109
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 86.06
Mean single sequence MFE -22.06
Consensus MFE -19.12
Energy contribution -19.12
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.46
Structure conservation index 0.87
SVM decision value 0.13
SVM RNA-class probability 0.595682
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18661551 109 + 22224390
AGCCGUUUCAUUUCACGCGUACAUGCCAGAAACUCACGAGCCCCA-AAUUGAUGUGCAGUGAAAAUGAAACACAGUUGGAAAUAACGCAAAAU----AUUUAGAAGAAGAAGAA
.((.((((((((((((..((((((....(.....).(((......-..))))))))).))).)))))))))...((((....)))))).....----................. ( -21.90)
>DroSec_CAF1 6556 103 + 1
AGCCGUUUCAUUUCACGCGUACAUGCCAGA-ACUCACGAGCCCCAAAAUUGAUGUGCAGUGAAAAUGAAACACAGUUGGAA--AACGCA-AAU----AUUUAGGAG---AAGAA
..((((((((((((((..((((((((..(.-.....)..))..((....)))))))).))).)))))))))...(((....--)))...-...----.....))..---..... ( -22.70)
>DroSim_CAF1 4750 103 + 1
AGCCGUUUCAUUUCACGCGUACAUGCCAGA-ACUCACGAGCCCCAAAAUUGAUGUGCAGUGAAAAUGAAACACAGUUGGAA--AACGCA-AAU----AUUUAGGAG---AAGAA
..((((((((((((((..((((((((..(.-.....)..))..((....)))))))).))).)))))))))...(((....--)))...-...----.....))..---..... ( -22.70)
>DroEre_CAF1 6954 85 + 1
AGCCGUUUCAUUUCACGCGUACAUGCCCGA-ACUCACGAGCCCCA-AAUUGAUGUGCAGUGAAAAUGAAACACAGUUUGAAA-AACGC--------------------------
....((((((((((((..((((((((.((.-.....)).))....-.....)))))).))).)))))))))...........-.....-------------------------- ( -20.50)
>DroYak_CAF1 6773 106 + 1
AGCCGUUUCAUUUCACGCGUACAUGCCAGA-ACUCACGAGCCCCAAAAUUGAUGUGCAGUGCAAAUGAAACACAGUUUGAAA-AACGCA-AAUAUGUAUUUAGCA-----AAAA
.((.((((((((((((..((((((((..(.-.....)..))..((....)))))))).))).)))))))))((((((((...-....))-))).))).....)).-----.... ( -22.50)
>consensus
AGCCGUUUCAUUUCACGCGUACAUGCCAGA_ACUCACGAGCCCCAAAAUUGAUGUGCAGUGAAAAUGAAACACAGUUGGAAA_AACGCA_AAU____AUUUAGGAG___AAGAA
.((.((((((((((((..((((((....(.....).(((.........))))))))).))).)))))))))...(((......))))).......................... (-19.12 = -19.12 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:53 2006