Locus 7472

Sequence ID X_DroMel_CAF1
Location 18,653,478 – 18,653,582
Length 104
Max. P 0.847538
window12256 window12257

overview

Window 6

Location 18,653,478 – 18,653,582
Length 104
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 88.08
Mean single sequence MFE -29.52
Consensus MFE -23.81
Energy contribution -24.12
Covariance contribution 0.31
Combinations/Pair 1.21
Mean z-score -1.39
Structure conservation index 0.81
SVM decision value -0.01
SVM RNA-class probability 0.529399
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18653478 104 + 22224390
UUGUUCAAGUUGGCCCAGAAAAACGUAUUUCCGUUUAAAUUCCGGGUUAAGGUGGGAGUUACCGCCAGCGGCACUUGACUGCUGAAGGCACUUAAAAAAGAUGU
...(((...(((((((.((((((((......)))))...))).)))))))(((((......)))))((((((....).)))))))).((((((....))).))) ( -28.70)
>DroSec_CAF1 12490 103 + 1
UUGUUCAAUUUGGCCCAGAAAAACGUAUUUCCGUUUAAAUUCCGGGUUAAGGUGGGAGUUCCCGCCAGCAGCACUUGACUGUUGAAGGCACUUAA-AAAGAUGU
.(.(((...(((((((.((((((((......)))))...))).)))))))((((((....))))))((((((....).)))))))).).......-........ ( -29.10)
>DroSim_CAF1 12442 103 + 1
UUGUUCAAUUUGGCCCAGAAAAACGUAUUUCCGUUUAAAUUCCGGGUUAAGGUGGGAGUUCCCGCCAGCAGCACUUGACUGCUGAAGGCACUUAA-AAAGAUGU
.(.(((...(((((((.((((((((......)))))...))).)))))))((((((....))))))((((((....).)))))))).).......-........ ( -31.50)
>DroEre_CAF1 11164 100 + 1
UGGUUCAGCUUGGCCCAGAAAAACGUAUUUCCGCUUAAGUUCCGGGCUAAGGUGGGCGUUACAGACU---GCGCCUGACUGCUAAAAUAACUUAA-AAAGGUGU
..(((((.((((((((.(((....((......)).....))).)))))))).)))))..........---((((((...................-..)))))) ( -28.80)
>consensus
UUGUUCAAUUUGGCCCAGAAAAACGUAUUUCCGUUUAAAUUCCGGGUUAAGGUGGGAGUUACCGCCAGCAGCACUUGACUGCUGAAGGCACUUAA_AAAGAUGU
...((((.((((((((.((((((((......)))))...))).)))))))).)))).......(((..(((((......)))))..)))............... (-23.81 = -24.12 +   0.31)

alignment

Postscript

secondary structure

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dotplot

Postscript

Window 7

Location 18,653,478 – 18,653,582
Length 104
Sequences 4
Columns 104
Reading direction reverse
Mean pairwise identity 88.08
Mean single sequence MFE -29.08
Consensus MFE -20.49
Energy contribution -21.55
Covariance contribution 1.06
Combinations/Pair 1.15
Mean z-score -2.37
Structure conservation index 0.70
SVM decision value 0.78
SVM RNA-class probability 0.847538
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18653478 104 - 22224390
ACAUCUUUUUUAAGUGCCUUCAGCAGUCAAGUGCCGCUGGCGGUAACUCCCACCUUAACCCGGAAUUUAAACGGAAAUACGUUUUUCUGGGCCAACUUGAACAA
........((((((((((.(((((.((.....)).))))).)))..............(((((((...(((((......))))))))))))...)))))))... ( -28.70)
>DroSec_CAF1 12490 103 - 1
ACAUCUUU-UUAAGUGCCUUCAACAGUCAAGUGCUGCUGGCGGGAACUCCCACCUUAACCCGGAAUUUAAACGGAAAUACGUUUUUCUGGGCCAAAUUGAACAA
........-(((((.(((.....((((.....))))..)))(((....)))..)))))(((((((...(((((......))))))))))))............. ( -26.80)
>DroSim_CAF1 12442 103 - 1
ACAUCUUU-UUAAGUGCCUUCAGCAGUCAAGUGCUGCUGGCGGGAACUCCCACCUUAACCCGGAAUUUAAACGGAAAUACGUUUUUCUGGGCCAAAUUGAACAA
........-(((((.(((..(((((......)))))..)))(((....)))..)))))(((((((...(((((......))))))))))))............. ( -32.90)
>DroEre_CAF1 11164 100 - 1
ACACCUUU-UUAAGUUAUUUUAGCAGUCAGGCGC---AGUCUGUAACGCCCACCUUAGCCCGGAACUUAAGCGGAAAUACGUUUUUCUGGGCCAAGCUGAACCA
........-.........((((((.....((((.---.........)))).......((((((((...(((((......)))))))))))))...))))))... ( -27.90)
>consensus
ACAUCUUU_UUAAGUGCCUUCAGCAGUCAAGUGCUGCUGGCGGGAACUCCCACCUUAACCCGGAAUUUAAACGGAAAUACGUUUUUCUGGGCCAAAUUGAACAA
.........(((((.(((..((((........))))..)))(((....)))..)))))(((((((...(((((......))))))))))))............. (-20.49 = -21.55 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:47 2006