Locus 7471

Sequence ID X_DroMel_CAF1
Location 18,653,179 – 18,653,291
Length 112
Max. P 0.854839
window12255

overview

Window 5

Location 18,653,179 – 18,653,291
Length 112
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 82.84
Mean single sequence MFE -31.63
Consensus MFE -22.30
Energy contribution -22.70
Covariance contribution 0.40
Combinations/Pair 1.17
Mean z-score -2.06
Structure conservation index 0.71
SVM decision value 0.80
SVM RNA-class probability 0.854839
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18653179 112 - 22224390
ACUAACAAUAUAACAAUAUAACAAAUUGUUAUGCAGCUGCGAGGGUAUUCGACUUUUGGCUCGC-------CAAGCGAGCUUUUCAUUCUUGUUAUUUGUA-GUUGCGUGCCCGCGGCAA
........(((((((((.......)))))))))..(((((..((((((.(((((...(((((((-------...)))))))...................)-)))).))))))))))).. ( -36.05)
>DroSec_CAF1 12178 104 - 1
ACUAACAAU--------AUAACAAAUUGUUAUGCAGCUGCGAGGGUAUUCGACUUUUGGCUCGC-------CAAGCGAGCUUUUCAUUCUUGUUAUUUGUA-GUUGCGUGCCCGCGGCAA
..(((((((--------.......)))))))....(((((..((((((.(((((...(((((((-------...)))))))...................)-)))).))))))))))).. ( -33.85)
>DroSim_CAF1 12132 104 - 1
ACUAACAAU--------AUAACAAAUUGUUAUGCAGCUGCGAGGGUAUUCGACUUUUGGCUCGC-------CAAGCGAGCUUUUCAUUCUUGUUAUUUGUA-GUUGCGUGCCCGCGGCAA
..(((((((--------.......)))))))....(((((..((((((.(((((...(((((((-------...)))))))...................)-)))).))))))))))).. ( -33.85)
>DroEre_CAF1 10845 111 - 1
ACUAAUAAU--------AUACAAAAUUGUUUUGCAGCUGCGAGGGUGUUCGACUUUGGGCUCGUAAGUAAGCAAGUAAGCUCUCCAUUCUUGUUAUUUGUA-UGUGCGUGCCCGCGGCAC
.........--------..................(((((((((........))))((((.((((.....((((((((.(...........))))))))).-..)))).))))))))).. ( -28.70)
>DroYak_CAF1 11525 103 - 1
ACUAAUUAU--------AUAACAAAUUAUUCUGCAGCUGCGAGGGUAUUCGAAUUUUGGCUCGCU------UAAGUAAGCUUUCCAUUUGUA---CGAGUAUUGUGCGUGCCCGCGGCAA
.........--------..................(((((..((((((..((((...((((..(.------...)..))))....))))(((---(((...))))))))))))))))).. ( -25.70)
>consensus
ACUAACAAU________AUAACAAAUUGUUAUGCAGCUGCGAGGGUAUUCGACUUUUGGCUCGC_______CAAGCGAGCUUUUCAUUCUUGUUAUUUGUA_GUUGCGUGCCCGCGGCAA
...................................(((((..((((((.((((....(((((((..........)))))))...((....))..........)))).))))))))))).. (-22.30 = -22.70 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:45 2006