| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,647,965 – 18,648,102 |
| Length | 137 |
| Max. P | 0.945143 |
| Location | 18,647,965 – 18,648,073 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 86.37 |
| Mean single sequence MFE | -28.95 |
| Consensus MFE | -19.65 |
| Energy contribution | -19.25 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.99 |
| Structure conservation index | 0.68 |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.945143 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18647965 108 - 22224390 UUACGUCCACCGAGCCAGCUGGUUCGCAACUUCUCC-CGGAACUCUCACUGUCUUCUCCGCCACACCACACCACAGCACACACACCAAAUUGUGUGUGUUGGUGUGCAC ..........((((((....))))))..........-((((((.......))....))))......(((((((..(((((((((......))))))))))))))))... ( -33.80) >DroSec_CAF1 6928 92 - 1 UUACGUCCACCGAGCCAGCUGGUUCGCAACUUCUCCCCGGAACACUCACUGUCUUCUCCGCCACACCAC-----------------AAAUUGUGUGUGUUGGUGUGCAC ...........(((((....)))))(((..........((((.((.....)).)))).(((((((((((-----------------.....))).))).)))))))).. ( -25.50) >DroSim_CAF1 6950 91 - 1 UUACGUCCACCGAGCCAGCUGGUUCGCAACUUCUCC-CGGAACUCUCACUGUCUUCUCCGCCACACCAC-----------------AAAUUGUGUGUGUUGGUGUGCAC ...........(((((....)))))(((........-.((((..(.....)..)))).(((((((((((-----------------.....))).))).)))))))).. ( -24.20) >DroEre_CAF1 6329 98 - 1 UUACGUCCGCCGAGCCAGCUGGUUCGCAACUUCUCC-CGCAACUCUCACUCUCUUCUCCACCACACCA----------CACACACCAAAUUGUGUGUGUUGGUGUGCAC ........((.(((((....))))))).........-........................(((((((----------(((((((......))))))).)))))))... ( -30.40) >DroYak_CAF1 6412 108 - 1 UUACGUCCACCGAGCCAGCUGGUUCGCAACUUCUCC-CGGAACUCUCACUCUCUUCUCCACCACACCACACCGCAGCACACACACCAAACAGUGUGUGUUGGUGUGCAC ..........((((((....))))))..........-.(((...............))).......(((((((..((((((((........)))))))))))))))... ( -30.86) >consensus UUACGUCCACCGAGCCAGCUGGUUCGCAACUUCUCC_CGGAACUCUCACUGUCUUCUCCGCCACACCAC_________CACACACCAAAUUGUGUGUGUUGGUGUGCAC ....(..(((((((((....)))))..................................(((((((.........................))))).)).))))..).. (-19.65 = -19.25 + -0.40)
| Location | 18,648,005 – 18,648,102 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 88.15 |
| Mean single sequence MFE | -17.97 |
| Consensus MFE | -14.42 |
| Energy contribution | -14.46 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.804343 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18648005 97 - 22224390 A----CUCAUACACCCAGUGGGCAAUUAAAUAUUUACGUCCACCGAGCCAGCUGGUUCGCAACUUCUCC-CGGAACUCUCACUGUCUUCUCCGCCACACCAC .----............((((((....................((((((....))))))..........-.(((((.......))....)))))).)))... ( -18.40) >DroSec_CAF1 6951 89 - 1 A----C---------CAGUGGGCAAUUAAAUAUUUACGUCCACCGAGCCAGCUGGUUCGCAACUUCUCCCCGGAACACUCACUGUCUUCUCCGCCACACCAC .----.---------..((((((....................((((((....))))))............((((.((.....)).))))..))).)))... ( -19.20) >DroSim_CAF1 6973 97 - 1 A----CCCAUACACCCAGUGGGCAAUUAAAUAUUUACGUCCACCGAGCCAGCUGGUUCGCAACUUCUCC-CGGAACUCUCACUGUCUUCUCCGCCACACCAC .----............((((((....................((((((....))))))..........-.(((((.......))....)))))).)))... ( -18.40) >DroEre_CAF1 6360 100 - 1 AUAUGUAUGUACGCCCAUUGGGCAAUUAAAUAUUUACGUCCGCCGAGCCAGCUGGUUCGCAACUUCUCC-CGCAACUCUCACUCUCUUCUCCACCACACCA- .......(((..((((...))))..................((.(((((....))))))).........-.)))...........................- ( -16.40) >DroYak_CAF1 6452 98 - 1 ---UACAUCUACACCCAGUGGGCAAUUAAAUAUUUACGUCCACCGAGCCAGCUGGUUCGCAACUUCUCC-CGGAACUCUCACUCUCUUCUCCACCACACCAC ---...........((.((((((..............))))))((((((....))))))..........-.))............................. ( -17.44) >consensus A____CACAUACACCCAGUGGGCAAUUAAAUAUUUACGUCCACCGAGCCAGCUGGUUCGCAACUUCUCC_CGGAACUCUCACUGUCUUCUCCGCCACACCAC .................((((((..............))))))((((((....))))))........................................... (-14.42 = -14.46 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:37 2006