Locus 7466

Sequence ID X_DroMel_CAF1
Location 18,645,454 – 18,645,547
Length 93
Max. P 0.565592
window12243

overview

Window 3

Location 18,645,454 – 18,645,547
Length 93
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 84.31
Mean single sequence MFE -17.69
Consensus MFE -10.46
Energy contribution -12.54
Covariance contribution 2.08
Combinations/Pair 1.11
Mean z-score -2.10
Structure conservation index 0.59
SVM decision value 0.06
SVM RNA-class probability 0.565592
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18645454 93 - 22224390
AUUCAUUUUGGCAUUUCCAAAGGACUAGAUUCUACCUACCCGUCAUCGGAAUAUAUGUGUACAUCCAACCUAUGCCACAAGUGGACCACA-AAC
.(((((((((((((.......(((.(((.......))).(((....)))..............))).....)))))).))))))).....-... ( -17.00)
>DroSec_CAF1 4288 84 - 1
AUUCACUUUGGCAUUUCCAAAGGACUAGAUUCUACCUACCCGUCAUUGGAAUAUAAGUGUACAUCUAACCUAUGCCACAAGUGG----------
...(((((((((((((((((..((((((.......)))...))).))))))....((.((.......)))))))))).))))).---------- ( -19.30)
>DroSim_CAF1 4293 93 - 1
AUUCACUUUGGCAUUUCCAAAGGACUAGAUUCUACCUACCCGUCAUCGGAAUAUAAGUGUACAUCUAACCUAUGCCACAAGUGGACCACA-AAC
.(((((((((((((......(((..(((((..(((((..(((....)))......)).))).))))).))))))))).))))))).....-... ( -21.70)
>DroEre_CAF1 4243 94 - 1
AUUCACUUUGGCAUUUCCAAAGGACUAGUUUCUACCUACCCGUCAUCAGAAUAUAAGUGUACAACUAGCCUACGUCACAAGUGGACCUCAAAAC
.(((((((((((........(((.((((((..(((((.....((....)).....)).))).)))))))))..)))).)))))))......... ( -18.20)
>DroYak_CAF1 4323 80 - 1
AUUCACUU--------------GACUAGAUUCUACCUACCCGUCAUCAGAAUAUAAGUGUACAACUAACCUACGCCACAAGUGGACCACAAAAC
.(((((((--------------(.....(((((..............)))))....(((((.........)))))..))))))))......... ( -12.24)
>consensus
AUUCACUUUGGCAUUUCCAAAGGACUAGAUUCUACCUACCCGUCAUCGGAAUAUAAGUGUACAUCUAACCUAUGCCACAAGUGGACCACA_AAC
.(((((((((((((......(((..(((((..(((((.....((....)).....)).))).))))).))))))))).)))))))......... (-10.46 = -12.54 +   2.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:35 2006