Locus 7464

Sequence ID X_DroMel_CAF1
Location 18,638,725 – 18,638,826
Length 101
Max. P 0.954415
window12239 window12240

overview

Window 9

Location 18,638,725 – 18,638,826
Length 101
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 77.50
Mean single sequence MFE -24.04
Consensus MFE -20.66
Energy contribution -21.46
Covariance contribution 0.80
Combinations/Pair 1.10
Mean z-score -1.44
Structure conservation index 0.86
SVM decision value 1.05
SVM RNA-class probability 0.906520
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18638725 101 + 22224390
----UUAUGUUUAUGUUUACUCCAGUUUAUUGAGUUCCAUGGCAAAAAAAAAAAAA---------------AAAUACCCCAGAGCCAUGUGGUUAGUUGACUCUGUCCAUAAGCUGACGU
----....(((((((..((....((((.(((((.(..((((((.............---------------............))))))..)))))).)))).))..)))))))...... ( -18.91)
>DroSec_CAF1 14054 104 + 1
-----UAUGCUUAUGUUUACUCCAGCUUAUUGAGUUCCAUGGCAAAAAAAAAAAAAGA-----------AGAAAAAACCCAGAGCCAUGUGGUUAGCUGGCUCUGUCUAUAAGCUGACGU
-----.................((((((((.((((......))...............-----------..........((((((((.((.....)))))))))))).)))))))).... ( -25.60)
>DroSim_CAF1 14938 93 + 1
-----UAUGCUUAUGUUUACUCCAGCUUAUUGAGUUCCAUGGCAAAA----------------------AGAAAAAACCCAGAGCCAUGUGGUUAGCUGGCUCUGUCAAUAAGCUGACGU
-----.................(((((((((((((......))....----------------------..........((((((((.((.....))))))))))))))))))))).... ( -29.70)
>DroEre_CAF1 14517 103 + 1
CGUUUCCAGUUUCUGUUUACUCCAGUUUAUUGAGUUCCAUGGCGAAAAAAAA-----------------ACAAAAAAUACCGAGCCAAGUAGUUAGUUGGCUCAGUCAAUAAGCUGACGU
.((...(((...)))...))..(((((((((((((......)).........-----------------............(((((((.(....).)))))))..))))))))))).... ( -24.60)
>DroYak_CAF1 15617 120 + 1
CGUUUCUAGUUUCUGUUUACUCCAGUUUAUUGGGUUCCAUGGCAAAAAAAAAAAAUGAAAAUAAGAGAUACAAAAAAAUCCAAGCCAUGUGGUUAGUUGGCUCUGUCAAUAAGCUGACGU
((((((((((..(((.......)))...))))))...((((((...........((....))..(.(((........))))..)))))).((((.((((((...)))))).)))))))). ( -21.40)
>consensus
____UUAUGUUUAUGUUUACUCCAGUUUAUUGAGUUCCAUGGCAAAAAAAAAAAA______________ACAAAAAACCCAGAGCCAUGUGGUUAGUUGGCUCUGUCAAUAAGCUGACGU
......................(((((((((((((......))....................................((((((((..........))))))))))))))))))).... (-20.66 = -21.46 +   0.80)

alignment

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secondary structure

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dotplot

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Window 0

Location 18,638,725 – 18,638,826
Length 101
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 77.50
Mean single sequence MFE -25.03
Consensus MFE -19.06
Energy contribution -19.30
Covariance contribution 0.24
Combinations/Pair 1.14
Mean z-score -1.89
Structure conservation index 0.76
SVM decision value 1.44
SVM RNA-class probability 0.954415
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18638725 101 - 22224390
ACGUCAGCUUAUGGACAGAGUCAACUAACCACAUGGCUCUGGGGUAUUU---------------UUUUUUUUUUUUUGCCAUGGAACUCAAUAAACUGGAGUAAACAUAAACAUAA----
((..(((.((((.((((((((((..........)))))))).((((...---------------............)))).......)).)))).)))..))..............---- ( -19.96)
>DroSec_CAF1 14054 104 - 1
ACGUCAGCUUAUAGACAGAGCCAGCUAACCACAUGGCUCUGGGUUUUUUCU-----------UCUUUUUUUUUUUUUGCCAUGGAACUCAAUAAGCUGGAGUAAACAUAAGCAUA-----
((..((((((((.((((((((((..........))))))))(((.......-----------...............))).......)).))))))))..)).............----- ( -28.35)
>DroSim_CAF1 14938 93 - 1
ACGUCAGCUUAUUGACAGAGCCAGCUAACCACAUGGCUCUGGGUUUUUUCU----------------------UUUUGCCAUGGAACUCAAUAAGCUGGAGUAAACAUAAGCAUA-----
((..(((((((((((((((((((..........))))))))(((.......----------------------....))).......)))))))))))..)).............----- ( -33.20)
>DroEre_CAF1 14517 103 - 1
ACGUCAGCUUAUUGACUGAGCCAACUAACUACUUGGCUCGGUAUUUUUUGU-----------------UUUUUUUUCGCCAUGGAACUCAAUAAACUGGAGUAAACAGAAACUGGAAACG
((..(((.((((((((((((((((........)))))))))).......((-----------------(((...........))))).)))))).)))..))...........(....). ( -26.60)
>DroYak_CAF1 15617 120 - 1
ACGUCAGCUUAUUGACAGAGCCAACUAACCACAUGGCUUGGAUUUUUUUGUAUCUCUUAUUUUCAUUUUUUUUUUUUGCCAUGGAACCCAAUAAACUGGAGUAAACAGAAACUAGAAACG
((..(((.((((((..((......)).....((((((..(((......((.............)).......)))..)))))).....)))))).)))..)).................. ( -17.04)
>consensus
ACGUCAGCUUAUUGACAGAGCCAACUAACCACAUGGCUCUGGGUUUUUUCU______________UUUUUUUUUUUUGCCAUGGAACUCAAUAAACUGGAGUAAACAUAAACAUAA____
((..(((.(((((((((((((((..........)))))))).....................................(....)...))))))).)))..)).................. (-19.06 = -19.30 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:33 2006