Locus 7463

Sequence ID X_DroMel_CAF1
Location 18,637,986 – 18,638,091
Length 105
Max. P 0.591358
window12238

overview

Window 8

Location 18,637,986 – 18,638,091
Length 105
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 82.29
Mean single sequence MFE -28.82
Consensus MFE -16.74
Energy contribution -18.10
Covariance contribution 1.36
Combinations/Pair 1.14
Mean z-score -1.96
Structure conservation index 0.58
SVM decision value 0.12
SVM RNA-class probability 0.591358
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18637986 105 - 22224390
GAUCGGCUUCACGAGCUCUAAUGCAUGCCAAUUGGAUUCAAUUAGCGCGCUAC-UACUACUUCUAAAAUAGAAAUAGACAAUU--UUUGUCGAGUUGAUGGAUGU------------UGC
.((((((((.((((((.(((((.....((....)).....))))).)).....-..(((.(((((...))))).)))......--.)))).))))))))......------------... ( -24.00)
>DroSec_CAF1 13364 102 - 1
GAUCGGCUUCACGAGCGCUAAUGCAUGCAAAUUGGAUUCAAUUAGCGCGCUAC----UACUUCUAAAAUAGAAAUAGAAAAUU--UUUGUCGAGUUGAUGGAUGC------------UGC
.((((((((.((((((((((((..((.(.....).))...))))))))....(----((.(((((...))))).)))......--.)))).))))))))......------------... ( -27.00)
>DroSim_CAF1 14189 102 - 1
GAUCGGCUCCACGAGCGCUAAUGCAUGCAAAUUGGAUUCAAUUAGCGCGCUAC----UAUUUUUAAAAUAGAAAUAGACAAUU--UUUGUGGAGUUGAUGGAUGC------------UGC
.(((((((((((((((((((((..((.(.....).))...))))))))....(----((((((((...)))))))))......--.)))))))))))))......------------... ( -36.30)
>DroYak_CAF1 14658 116 - 1
GGUCGGCUCCACGAGCGCUAAUGCAUGCAAAUUGGAUUCAAUUAGCGCGCUAC----UACUUCUAAAAUAGAAAUAGACAAUUUUUUUGUCGAGUUGAUGGAUGUAGCUACUGCUAUUGC
.((((((((.((((((((((((..((.(.....).))...))))))))....(----((.(((((...))))).))).........)))).))))))))....(((((....)))))... ( -33.40)
>DroAna_CAF1 27745 97 - 1
GCGCGGCUCCACGAGCGCUAAUGCAUGCAAAUUGAAUUCAAUUAGCGGCCAACAGACUACUUUUAAAAUAGAAAUAGACAAUU--UU---------GCUGUGCGC------------UGC
((((((((........((....))..((.(((((....))))).)))))).((((.(((.(((((...))))).))).((...--.)---------)))))))))------------... ( -23.40)
>consensus
GAUCGGCUCCACGAGCGCUAAUGCAUGCAAAUUGGAUUCAAUUAGCGCGCUAC____UACUUCUAAAAUAGAAAUAGACAAUU__UUUGUCGAGUUGAUGGAUGC____________UGC
.((((((((.((((((((((((..((.(.....).))...))))))))............(((((...))))).............)))).))))))))..................... (-16.74 = -18.10 +   1.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:31 2006