Locus 7462

Sequence ID X_DroMel_CAF1
Location 18,637,871 – 18,637,965
Length 94
Max. P 0.900347
window12237

overview

Window 7

Location 18,637,871 – 18,637,965
Length 94
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 93.66
Mean single sequence MFE -27.46
Consensus MFE -25.04
Energy contribution -24.52
Covariance contribution -0.52
Combinations/Pair 1.22
Mean z-score -1.38
Structure conservation index 0.91
SVM decision value 1.01
SVM RNA-class probability 0.900347
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18637871 94 + 22224390
CCCCAUAAUUCUA-UCCAUGUGACCACAGAUCUGGAACGUACUCGGCAAGUGAGAGUGUGAGUAUUACAGCACUCUCCAUGGCGACAACGACAAU
........(((((-....(((....)))....)))))(((..(((.((.(.((((((((..(.....).))))))))).)).)))..)))..... ( -24.80)
>DroSec_CAF1 13251 94 + 1
CCCCAUGAUUCCC-UCCAUGUGACCGCAGAUCUGGAACGUACUCGGCAAGUGAGAGUGCGAGUAUUACAGCACUCUCCAUGGCGACAGCGACAAU
........((((.-....(((....))).....))))(((..(((.((.(.((((((((..........))))))))).)).)))..)))..... ( -28.20)
>DroSim_CAF1 14082 94 + 1
CCCCAUGAUUCCC-UCCAUGUGACCGCAGAUCUGGAACGUACCCGGCAAGUGAGAGUGCGAGUAUUACAGCACUCUCCAUGGCGACAACGACAAU
........((((.-....(((....))).....))))(((...((.((.(.((((((((..........))))))))).)).))...)))..... ( -25.90)
>DroEre_CAF1 13753 94 + 1
CCCCAUCGUUCCCUUCCAAGUGACCGCAAAUGUGG-ACGUACUCGGCAAGUGAGAGUGCGAGUAUUACAGCACUCUCCAUGGCGACAACGACAAU
.....(((((.........(((.((((....))))-...)))(((.((.(.((((((((..........))))))))).)).))).))))).... ( -29.10)
>DroYak_CAF1 14544 95 + 1
CCCCAUCAUUCCCUUCCAUGUGACCGCAGAUGUGGAACGUACUCGGCAAGUGAGAGUGCGAGUAUUACAGCACUCUCCAUGGCGACAACGACAAU
.............((((((((........))))))))(((..(((.((.(.((((((((..........))))))))).)).)))..)))..... ( -29.30)
>consensus
CCCCAUCAUUCCC_UCCAUGUGACCGCAGAUCUGGAACGUACUCGGCAAGUGAGAGUGCGAGUAUUACAGCACUCUCCAUGGCGACAACGACAAU
..(((.((((........(((....))))))))))..(((..(((.((.(.((((((((..........))))))))).)).)))..)))..... (-25.04 = -24.52 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:30 2006