| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,637,420 – 18,637,522 |
| Length | 102 |
| Max. P | 0.967225 |
| Location | 18,637,420 – 18,637,522 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 74.65 |
| Mean single sequence MFE | -35.58 |
| Consensus MFE | -10.76 |
| Energy contribution | -11.48 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.30 |
| SVM decision value | 1.61 |
| SVM RNA-class probability | 0.967225 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18637420 102 + 22224390 GAGAGGUGGCCACUUCUCCGGUCG-------GCA---GUG-CAUGUUAAGUUCAAGUGCGUGCAUUGCUCGAACCCGGACCACAGUCAUCAUCCUCCAUGAGCCUCCAUACCA (.((((((((......((((((((-------(((---(((-(((((...........))))))))))).)))..))))).....))).((((.....))))))))))...... ( -37.00) >DroSec_CAF1 12828 89 + 1 GAGAGGUGGCCACUUCUCCGGUCG-------GCA---GUG-CAUGUUAAGUUCAAGUGCGUGCAUUGCUCGAACCCGGACCAUAGUCA---UCCUCCAUGAGC---------- (((.((((((......((((((((-------(((---(((-(((((...........))))))))))).)))..))))).....))))---))))).......---------- ( -37.00) >DroSim_CAF1 13645 89 + 1 GAGAGGUGGCCACUUCUCCGGUCG-------GCA---GUG-CAUGUUAAGUUCAAGUGCGUGCAUUGCUCGAACCCGGACCACAGUCA---UCCUCCAUGAGC---------- (((.((((((......((((((((-------(((---(((-(((((...........))))))))))).)))..))))).....))))---))))).......---------- ( -37.00) >DroYak_CAF1 14076 93 + 1 GGGUGGUGGCCACUUCU---GGCGUCCGGGUGCA---GUG-CAAGUUAAGUUCAAGUGCGUGCAUUGCUCGAACCCGGACUACACUCA---UCCGCCAUGAGC---------- ((((((((((((....)---)))(((((((((((---(((-((.((...........)).))))))))....))))))))..))).))---))).........---------- ( -43.30) >DroAna_CAF1 27325 84 + 1 ACGAGACGGUC--CCCUGCAGGCU-------GCACUAGCGCCCGGUUAAGUUCAAGUGCGUGCAUUGCUCGGACUCG--CCACAGCCC---CCCUCCC--------------- ..(((..((((--(...(((((((-------(((((.(.((........)).).)))))).)).))))..))))).(--(....))..---..)))..--------------- ( -23.60) >consensus GAGAGGUGGCCACUUCUCCGGUCG_______GCA___GUG_CAUGUUAAGUUCAAGUGCGUGCAUUGCUCGAACCCGGACCACAGUCA___UCCUCCAUGAGC__________ ..((((((((......(((((..........((....))..........((((.((((....))))....))))))))).....))))....))))................. (-10.76 = -11.48 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:29 2006