Locus 7459

Sequence ID X_DroMel_CAF1
Location 18,634,066 – 18,634,184
Length 118
Max. P 0.877836
window12233

overview

Window 3

Location 18,634,066 – 18,634,184
Length 118
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 88.36
Mean single sequence MFE -34.70
Consensus MFE -28.07
Energy contribution -28.14
Covariance contribution 0.06
Combinations/Pair 1.15
Mean z-score -1.98
Structure conservation index 0.81
SVM decision value 0.90
SVM RNA-class probability 0.877836
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18634066 118 - 22224390
UGGAACUCAGCGGUUCAGGUUUUCUUCUAACUUGGUUGUCCUCCAGCAGAGCUGAGUUUUUUUUUUUU--UUUAGAUCGGGCAAUUAAAUGUCUGGUGGGGGGAUAUUCUGAACUGAGUA
....(((((...(((((((...((((((((((..(((.(.(....).).)))..))))..........--.....((((((((......)))))))).))))))...)))))))))))). ( -34.40)
>DroSim_CAF1 10387 112 - 1
UGGAACUCAGUGGUUCAGGUUUUCUUCUAACUUGGUUGUCCUCCAGCAGAGCUGAGGUUU------UU--UUUAGAUCGGGCAAUUAAAUGUCUGGUGGGGGGAUAUUCUGAACUGAGUA
....(((((((...(((((((.......))))))).((((((((.......((((((...------.)--)))))((((((((......)))))))).))))))))......))))))). ( -36.80)
>DroEre_CAF1 10356 113 - 1
UGGGGCUCAGUGGUUCAGGUUUUCUUCUAACUUGGUUGUUCCCCAGCGGAGCUGAGGUUU------UUUAUUUUGAUCGAGCAGUUAAAUUUCUGGUGGG-GGAUAUUCUGAACUGAGUG
....(((((((...(((((((.......))))))).(((((((((.((((((((.((((.------........))))...))))......)))).))))-)))))......))))))). ( -38.30)
>DroYak_CAF1 10712 112 - 1
UGGGACUCAGUGGUUCAGGUUUUCCUCUAACUUGGUUGUCCUCCAGCAGAGCUGAGGUUU------UU--UUUAGAUCGAGCUAUUAAAUGUCAGGUGGGGGGAUAUUCUCAACUGAAUG
......(((((...(((((((.......))))))).((((((((.((....((((.((((------..--..(((......)))..)))).)))))).))))))))......)))))... ( -29.30)
>consensus
UGGAACUCAGUGGUUCAGGUUUUCUUCUAACUUGGUUGUCCUCCAGCAGAGCUGAGGUUU______UU__UUUAGAUCGAGCAAUUAAAUGUCUGGUGGGGGGAUAUUCUGAACUGAGUA
....(((((((...(((((((.......))))))).(((((((((.(((((((..((((...............)))).))).........)))).)))).)))))......))))))). (-28.07 = -28.14 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:26 2006