Locus 7458

Sequence ID X_DroMel_CAF1
Location 18,633,916 – 18,634,034
Length 118
Max. P 0.582734
window12232

overview

Window 2

Location 18,633,916 – 18,634,034
Length 118
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 93.50
Mean single sequence MFE -27.35
Consensus MFE -25.25
Energy contribution -25.50
Covariance contribution 0.25
Combinations/Pair 1.14
Mean z-score -1.38
Structure conservation index 0.92
SVM decision value 0.10
SVM RNA-class probability 0.582734
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18633916 118 - 22224390
UAUACAAGGACUUGCAAAGUGCCAUGGCAAACCUGAGCUAAUAGAAGCUCUUAUUAAACUCGUAAAAGUGCGAUUUAAAUCUAAGCUAAGUUUAGACUAUUAGCACGGUAGUCACACC
........((((.......(((....))).(((.(.((((((((.........(((((.(((((....)))))))))).(((((((...))))))))))))))).))))))))..... ( -29.60)
>DroSim_CAF1 10241 118 - 1
UAUACAAGGACUUGCAAAGUGCCAUGGCAAACCUGAGCUAAUAGAAGCUCUUAUUAGACUCGUAAAAGUGCGAUUUAAAUCCAAGCUAAGUUUAGACUAUUAGCACGGUAGUCACACC
.......((((((((....(((....))).....(((((......)))))...(((((.(((((....))))))))))......)).)))))).(((((((.....)))))))..... ( -27.20)
>DroEre_CAF1 10213 118 - 1
UGUACAAGGACUUGCAAAGUGCCAUGGCAAACCUGAGUUAAUAGAAGCUCCAACUAAACUCGUAAAAGUGCGAUUGAAAUCUUAGCUAAGUUUAGACUAUUAGCACAGUAGUCACACC
(((....((((((((.((((((....))).....(((((......))))).........(((((....))))).......))).)).)))))).(((((((.....)))))))))).. ( -23.60)
>DroYak_CAF1 10560 118 - 1
UAUACAAGGACUUGCCAAGUGCCAUGGCAAACCUGAGUGAGUAGAGGCUCUUAUUAAACUCGUAAAAGUGCGAUUUGAAUCUAAGCUAAGUUUAGACUAUUAGCACGGUAGUCACACC
......(((..((((((.......)))))).)))..((((.((..((((..(((((((.(((((....)))))))))).(((((((...))))))).))..))).)..)).))))... ( -29.00)
>consensus
UAUACAAGGACUUGCAAAGUGCCAUGGCAAACCUGAGCUAAUAGAAGCUCUUAUUAAACUCGUAAAAGUGCGAUUUAAAUCUAAGCUAAGUUUAGACUAUUAGCACGGUAGUCACACC
........((((.......(((....)))...(((.((((((((.........(((((.(((((....)))))))))).(((((((...))))))))))))))).))).))))..... (-25.25 = -25.50 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:25 2006