| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,631,945 – 18,632,058 |
| Length | 113 |
| Max. P | 0.534529 |
| Location | 18,631,945 – 18,632,058 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 78.91 |
| Mean single sequence MFE | -19.57 |
| Consensus MFE | -14.71 |
| Energy contribution | -15.32 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.14 |
| Mean z-score | -0.95 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.534529 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18631945 113 + 22224390 UCCCAAUUCCAUGCCCAUCUCCCAUCCAGAACCCUUUCUCCAUAAAUAGACGGCAAAUUGUUCACUGCGCGCUGUCUAUUUUUAAAGCGAAUGUAAUUUGUAAGUCUUCUGCA---- ..........................(((((..(((.......(((((((((((....(((.....))).))))))))))).....((((((...)))))))))..)))))..---- ( -20.00) >DroSec_CAF1 7357 113 + 1 UCCCAAUGCCAUGACCAUCUCCCAUCCAGAACCCUUUCUCCAUAAAUAGACGGCAAAUUGUUCACUGCGCGCUGUCUAUUUUUAAAGCGAAUGCAAUUUGUAAGUCUUCUGCA---- ..........................(((((..(((.......(((((((((((....(((.....))).))))))))))).....((((((...)))))))))..)))))..---- ( -20.00) >DroSim_CAF1 7981 113 + 1 UCCCAAUGCCAUGACCAUCUCCCAUCCAGAACCCUUUCUCCAUAAAUAGACGGCAAAUUGUUCACUGCGCGCUGUCUAUUUUUAAAGCGAAUGCAAUUUGUAAGUCUUCUGCA---- ..........................(((((..(((.......(((((((((((....(((.....))).))))))))))).....((((((...)))))))))..)))))..---- ( -20.00) >DroEre_CAF1 8319 101 + 1 UCCCA------------GCUCCCAUCCAGAACCCUUUCUCCAUAAAUAGACGGCAAAUUGUUCACUGUGCGCUGUCUAUUUUUAAAGCGAAUGCAAUUUGUAAGCCUUCUGCA---- .....------------.........(((((..(((.......(((((((((((..((........))..))))))))))).....((((((...)))))))))..)))))..---- ( -19.20) >DroYak_CAF1 8546 104 + 1 -UACC------------CAUCCCAACCAGAACCCUUUCUCCAUAAAUAGACAGCAAAUUGUUCGCCGUGCGCUGUCUAUUUUUAAAGCGAAUGCAAUUUGUAAGUCUUCUGCAUUUC -....------------.........(((((..(((.......(((((((((((..((.(....).))..))))))))))).....((((((...)))))))))..)))))...... ( -21.20) >DroPer_CAF1 12748 93 + 1 ------------GUCAAUGUCUAAGCCGGAGCUCUUUCACCAUAAAUAG----CAAACUGUUUG--GAUCGUUGUCUAUUUUUAAAGCCUCAGCGAUUUGUAAGACUU--GCA---- ------------(.((((((((((((.(..(((.(((......))).))----)...).)))))--)).))))).)................((((.((....)).))--)).---- ( -17.00) >consensus UCCCA_______G_CCAUCUCCCAUCCAGAACCCUUUCUCCAUAAAUAGACGGCAAAUUGUUCACUGCGCGCUGUCUAUUUUUAAAGCGAAUGCAAUUUGUAAGUCUUCUGCA____ ..........................(((((..(((.(.....(((((((((((................))))))))))).....((....)).....).)))..)))))...... (-14.71 = -15.32 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:24 2006