Locus 7456

Sequence ID X_DroMel_CAF1
Location 18,630,865 – 18,630,977
Length 112
Max. P 0.500000
window12230

overview

Window 0

Location 18,630,865 – 18,630,977
Length 112
Sequences 4
Columns 115
Reading direction reverse
Mean pairwise identity 86.40
Mean single sequence MFE -30.07
Consensus MFE -22.94
Energy contribution -24.00
Covariance contribution 1.06
Combinations/Pair 1.04
Mean z-score -1.37
Structure conservation index 0.76
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18630865 112 - 22224390
GGUAGGGGAACCAUGGCUUCUCGACCAGACAGACAAACGUUGCGUAACACCCACGAAAUAAUGGCCAGUAAUGGCCAAUAGUUGAAUAGUC---GUGUGCAGCCAUACAGCACAA
....((....))((((((..(((((............(((.(.(.....)).)))......((((((....))))))...)))))..))))---))((((.........)))).. ( -32.00)
>DroSec_CAF1 6313 108 - 1
----GGGUAACCAUGGCUUCUCGACCAGACAGACACACGUUGCGUAACACCCACGAAAUAAUGGCCAGUAAUGGCCAAUAGUUGAAUAGUC---UUGUGCAGCCAUACAGCACAA
----((....))..((((..(((((............(((.(.(.....)).)))......((((((....))))))...)))))..))))---.(((((.........))))). ( -29.10)
>DroSim_CAF1 6940 108 - 1
----GGGUAACCAUGGCUUCUCGACCAGACAGACACACGUUGCGUAACACCCACGAAAUAAUGGCCAGUAAUGGCCAAUAGUUGAAUAGUC---GUGUGCAGCCAUACAGCACAA
----.(((..((((((((..(((((............(((.(.(.....)).)))......((((((....))))))...)))))..))))---))).)..)))........... ( -30.70)
>DroEre_CAF1 7296 100 - 1
----GGGGAACCAUGGCUUCUCGCCCAGACGG-----CGUUGCGUAACACCCACGAAAUAAUGGCCAG-----ACCAGCAGUCGAAUAGAGGAGUUGUGCAGCCAUACAACACA-
----((....))(((((....((((.....))-----)).((((((((.(((.(((.....(((....-----.)))....)))....).)).)))))))))))))........- ( -28.50)
>consensus
____GGGGAACCAUGGCUUCUCGACCAGACAGACACACGUUGCGUAACACCCACGAAAUAAUGGCCAGUAAUGGCCAAUAGUUGAAUAGUC___GUGUGCAGCCAUACAGCACAA
....((....))((((((.(.((....(((........(((....))).....(((.....((((((....))))))....)))....)))....)).).))))))......... (-22.94 = -24.00 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:23 2006