| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,607,321 – 18,607,418 |
| Length | 97 |
| Max. P | 0.684919 |
| Location | 18,607,321 – 18,607,418 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 84.94 |
| Mean single sequence MFE | -45.16 |
| Consensus MFE | -32.90 |
| Energy contribution | -32.95 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.63 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.684919 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18607321 97 + 22224390 GAGAUGACCAGCAGGUUGCCCAGCACGGCGAACAGCAGAAUCAUGCUAUAGCUGGGUAUCAGCCAGACGGGCAUGCCAGUGGAAGUA---CUGGAGCUGG-------- .......(((((.(((.(((((((..(.....)((((......))))...)))))))))).(((.....)))...((((((....))---)))).)))))-------- ( -38.00) >DroPse_CAF1 81141 107 + 1 GAGAUGACCAGCAGAUUGCCCAGCACGGCGAACAGCAGAAUCACGCUGUAGCUGGGUAUCAGCCAGACGGGCAUCUCCGUGGUGCUGGUGGCGGCGCUGCUG-CUGCC ......((((((.(((.(((((((((((((.............)))))).)))))))))).(((..(((((....))))))))))))))(((((((....))-))))) ( -50.82) >DroSim_CAF1 66507 97 + 1 GAGAUGACCAGCAGGUUGCCCAGCACGGCGAACAGCAGGAUCAUGCUGUAGCUGGGUAUCAGCCAGACGGGCAUGCCAGUGGAAGUA---CUGGAGCUGG-------- .......(((((....(((((....((((..((((((......)))))).))))(((....)))....)))))..((((((....))---)))).)))))-------- ( -42.10) >DroEre_CAF1 54944 105 + 1 GAGAUGACCAGCAGGUUGCCCAGCACGGCGAACAGCAGGAUCAUGCUGUAGCUGGGUAUCAGCCAGACGGGCAUGCCAGUGGAGCUG---CUGGAGCUGGAGGCGGGA .......(((((....(((((....((((..((((((......)))))).))))(((....)))....)))))..(((((......)---)))).)))))........ ( -43.10) >DroYak_CAF1 59477 107 + 1 GAGAUGACCAGCAGGUUGCCCAGCACGGCGAACAGCAGGAUUAUGCUGUAGCUGGGUAUCAGCCACACGGGCAUGCCAGUGGAACUACUACUGGAGCUGGAA-CUGGA .......(((((....(((((....((((..((((((......)))))).))))(((....)))....)))))..(((((((.....))))))).)))))..-..... ( -46.10) >DroPer_CAF1 80333 107 + 1 GAGAUGACCAGCAGAUUGCCCAGCACGGCGAACAGCAGAAUCACGCUGUAGCUGGGUAUCAGCCAGACGGGCAUCUCCGUGGUGCUGGUGGCGGCGCUGCUG-CUGCC ......((((((.(((.(((((((((((((.............)))))).)))))))))).(((..(((((....))))))))))))))(((((((....))-))))) ( -50.82) >consensus GAGAUGACCAGCAGGUUGCCCAGCACGGCGAACAGCAGAAUCAUGCUGUAGCUGGGUAUCAGCCAGACGGGCAUGCCAGUGGAACUA___CUGGAGCUGG_G_CUG__ .......(((((.(((.(((((((((((((.............)))))).)))))))))).(((.....))).......................)))))........ (-32.90 = -32.95 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:17 2006