Locus 7451

Sequence ID X_DroMel_CAF1
Location 18,605,745 – 18,605,836
Length 91
Max. P 0.543624
window12219

overview

Window 9

Location 18,605,745 – 18,605,836
Length 91
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 96.34
Mean single sequence MFE -27.10
Consensus MFE -26.12
Energy contribution -25.90
Covariance contribution -0.22
Combinations/Pair 1.12
Mean z-score -1.48
Structure conservation index 0.96
SVM decision value 0.02
SVM RNA-class probability 0.543624
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18605745 91 + 22224390
CACUUCCCAACUGGCACCAUUAGGAGGUGGAACUGCGACCGCGUUUGUGCUGUUCCGCCUGUAAUUGCAGAACCCCACGUCCACCUCCUCA
......((....)).......((((((((((...((....))....(((..((((.((........)).))))..))).)))))))))).. ( -29.10)
>DroSec_CAF1 66729 91 + 1
CACCUCCCAACUGGCACCAUUAGGAGGUGGAACUGCGACCGCGCUUGUGCUGUUCCGCCUGUAAUUGCAGAGCCCCACGUCCACCUUCUCA
..((........)).......((((((((((...(((....)))..(((..((((.((........)).))))..))).)))))))))).. ( -27.80)
>DroSim_CAF1 64966 91 + 1
CACUUCCCAACUGGCACCAUUAGGAGGUGGAACUCCGACCGCGUUUGUGCUGUUCCGCCUGUAAUUGCAGAGCCCCACGUCCACCUUCUCA
......((....)).......((((((((((.....(((.(((....))).)))..((((((....)))).))......)))))))))).. ( -24.40)
>consensus
CACUUCCCAACUGGCACCAUUAGGAGGUGGAACUGCGACCGCGUUUGUGCUGUUCCGCCUGUAAUUGCAGAGCCCCACGUCCACCUUCUCA
......((....)).......((((((((((...(((....)))..(((..((((.((........)).))))..))).)))))))))).. (-26.12 = -25.90 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:14 2006