| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,601,296 – 18,601,415 |
| Length | 119 |
| Max. P | 0.663421 |
| Location | 18,601,296 – 18,601,415 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 83.19 |
| Mean single sequence MFE | -29.87 |
| Consensus MFE | -24.80 |
| Energy contribution | -26.00 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.663421 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18601296 119 - 22224390 AAACUUGCAUAUCAUUUUGCGAGAAAAUACCAUUCCAAUAUAAUACAAUGCAGCUGCAGAUGGCUGAAGGGAUAAGCACAUUAGGGUGGACCUUAAUUGCCUGAAUGAGGUGUCGCAUU ...((((((........))))))...((((((((((..(((......)))(((((......)))))..)))))..(((.(((((((....))))))))))........)))))...... ( -30.50) >DroSec_CAF1 62365 119 - 1 AAACUUGCAUAUCAUUUUGCGAGAACAUACCAUUCUAAUAUAAUACAAUGCAGCUGCAGCUGGCUGAAGGGAUAAGCACAUUAGGGUGGACCUUAAUUGCCUGAAUGGGGUGUCCCAAU ...((((((........)))))).(((..((((((..........(....(((((......)))))....)....(((.(((((((....))))))))))..))))))..)))...... ( -34.20) >DroSim_CAF1 60656 97 - 1 ----------------------GAACAUACCAUUUUAAUAUAAUACAAUGCAGCUGCAGCUGGCUGAAGGGAUAAGCACAUUAGGGUGGACCUUAAUUGCCUGAAUGGGGUGUGCCAAU ----------------------..(((..((((((..........(....(((((......)))))....)....(((.(((((((....))))))))))..))))))..)))...... ( -24.90) >consensus AAACUUGCAUAUCAUUUUGCGAGAACAUACCAUUCUAAUAUAAUACAAUGCAGCUGCAGCUGGCUGAAGGGAUAAGCACAUUAGGGUGGACCUUAAUUGCCUGAAUGGGGUGUCCCAAU ...((((((........)))))).((((.((((((..........(....(((((......)))))....)....(((.(((((((....))))))))))..)))))).))))...... (-24.80 = -26.00 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:10 2006