Locus 7448

Sequence ID X_DroMel_CAF1
Location 18,601,002 – 18,601,113
Length 111
Max. P 0.547286
window12213

overview

Window 3

Location 18,601,002 – 18,601,113
Length 111
Sequences 3
Columns 111
Reading direction reverse
Mean pairwise identity 79.87
Mean single sequence MFE -16.35
Consensus MFE -10.01
Energy contribution -9.79
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -1.81
Structure conservation index 0.61
SVM decision value 0.03
SVM RNA-class probability 0.547286
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18601002 111 - 22224390
CCAUAGACCUUACAGCUUAUUGCAUUGAAGUCUAAAUUGUGUAUGAACAAAUAUGUAUAUUUGCAAAUUUCACAAGUGUUUUGGUAAGCUAUAAAUUCCAAAAACACGCAU
...(((((.(((..((.....))..))).)))))..(((((.((...((((((....))))))...))..)))))(((((((((.((........)))).))))))).... ( -21.40)
>DroSec_CAF1 62096 86 - 1
-------CCUUACAGCCUAUUGCAUU--------------GUAUGAACAAAUA----UAUUUGCAAAUUUCACAAGUGUUUUGGUAAACUAUUAAUUCCAGAUACACCCAU
-------............(((((.(--------------((((......)))----))..))))).........(((((((((.............))))).)))).... ( -13.82)
>DroSim_CAF1 60407 86 - 1
-------CCUUACAGCCUAUUGCAUU--------------GUAUGAACAAAUA----UAUUUGCAAAUUUCACAAGUGUUUUGGUAAACUAUUAAUUCCAGAUACACCCAU
-------............(((((.(--------------((((......)))----))..))))).........(((((((((.............))))).)))).... ( -13.82)
>consensus
_______CCUUACAGCCUAUUGCAUU______________GUAUGAACAAAUA____UAUUUGCAAAUUUCACAAGUGUUUUGGUAAACUAUUAAUUCCAGAUACACCCAU
..............((.....))....................((((((((((....)))))).....))))...(((((((((.............))))).)))).... (-10.01 =  -9.79 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:09 2006