Locus 7447

Sequence ID X_DroMel_CAF1
Location 18,596,372 – 18,596,467
Length 95
Max. P 0.566547
window12212

overview

Window 2

Location 18,596,372 – 18,596,467
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 95.10
Mean single sequence MFE -29.82
Consensus MFE -22.16
Energy contribution -22.76
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -2.19
Structure conservation index 0.74
SVM decision value 0.07
SVM RNA-class probability 0.566547
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18596372 95 + 22224390
ACACUAUAAUUGAGCGGCACUCGCCAUAAGUUGGCCAAACUGGCGGAUGUCGCUCGGAGUGUGGCAUCUUAUGACCCAGUUUUAUUCCGUCUUUA
...........((((((((..(((((...(((.....))))))))..))))))))(((((((((..((....)).)))....))))))....... ( -32.70)
>DroSec_CAF1 57545 93 + 1
ACACUAUAAUUGAGCGGCACUCACCAUAAGUUGGCCAAACUGGCGGAUGUCGCUCCGAG--UGGCAUCUUAUGACCCAGUUUUAUUCCGUCUUUA
...........((((((......(((.....)))..(((((((.(((((((((.....)--))))))))......)))))))....))).))).. ( -23.90)
>DroSim_CAF1 55810 93 + 1
ACACUAUAAUUGAGCGGCACUCGCCAUAAGUUGGCCAAACUGGCGGAUGUCGCUCCGAG--UGGCAUCUUAUGACCCAGUUUUAUUCCGUCUUUA
.((((......((((((((..(((((...(((.....))))))))..))))))))..))--))................................ ( -28.00)
>DroEre_CAF1 45508 93 + 1
ACACUAUAAUUGAGCGGCAGUCGCCAUAAGUUGGCCAAACAGGCGGCUGUCGCUCCGAG--UGGCAUCUUGUGACCCAGUUUUAUUCCGUCUUUA
.((((......((((((((((((((....(((.....))).))))))))))))))..))--))................................ ( -31.50)
>DroYak_CAF1 49308 93 + 1
ACACUAUAAUUGAGCGGCAGUCGCCAUAAGUUGGCCAAACUGGCGGCUGUCGCCCGGAG--UGGCAUCUUAUGACCCACUUUUAUUCCGUCUUUA
...........(.(((((((((((((...(((.....)))))))))))))))).)((((--(((..((....)).)))))))............. ( -33.00)
>consensus
ACACUAUAAUUGAGCGGCACUCGCCAUAAGUUGGCCAAACUGGCGGAUGUCGCUCCGAG__UGGCAUCUUAUGACCCAGUUUUAUUCCGUCUUUA
...........((((((((.((((((...(((.....))))))))).))))))))......(((..((....)).)))................. (-22.16 = -22.76 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:08 2006