Locus 7446

Sequence ID X_DroMel_CAF1
Location 18,596,122 – 18,596,216
Length 94
Max. P 0.692608
window12211

overview

Window 1

Location 18,596,122 – 18,596,216
Length 94
Sequences 3
Columns 94
Reading direction reverse
Mean pairwise identity 82.64
Mean single sequence MFE -30.17
Consensus MFE -25.92
Energy contribution -26.37
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -1.40
Structure conservation index 0.86
SVM decision value 0.33
SVM RNA-class probability 0.692608
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18596122 94 - 22224390
UGGAUGUGGGUGUGGGUGUUGGUGCUGGUGCUGGUGUGGAUAUCCAGGAUGGCCAGAACGGGCUGGCCGGGAUGCUGUUGAGUAGCCAUCGGCA
....(((.((((((((((((.(..((......))..).))))))))...(((((((......)))))))....((((.....)))))))).))) ( -34.30)
>DroSec_CAF1 57313 77 - 1
-----------------GUGGGUGCGGGUGCUGGUGUGGAUAUCGUGGAUGGCCAGAACGGGCUGCUCGGGAUGCUGUUGAGUAGCCAUCGGCA
-----------------((.(((..((.((((.(.(..(.((((.((..(((((......)))))..)).)))))..)).)))).))))).)). ( -25.90)
>DroSim_CAF1 55578 77 - 1
-----------------GUGGGUGCGGGUGCUGGUGUGGAUAUCCUGGAUGGCCAGAACGGGCUGCUCGGGAUGCUGUUGAGUAGCCAUCGGCA
-----------------((.(((..((.((((.(.(..(.(((((((..(((((......)))))..))))))))..)).)))).))))).)). ( -30.30)
>consensus
_________________GUGGGUGCGGGUGCUGGUGUGGAUAUCCUGGAUGGCCAGAACGGGCUGCUCGGGAUGCUGUUGAGUAGCCAUCGGCA
.................((.((((..(.((((.(.(..(.((((((((..((((......))))..)))))))))..)).)))).))))).)). (-25.92 = -26.37 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:07 2006