Locus 7445

Sequence ID X_DroMel_CAF1
Location 18,593,957 – 18,594,055
Length 98
Max. P 0.654986
window12210

overview

Window 0

Location 18,593,957 – 18,594,055
Length 98
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 71.24
Mean single sequence MFE -26.12
Consensus MFE -7.16
Energy contribution -8.14
Covariance contribution 0.98
Combinations/Pair 1.07
Mean z-score -1.75
Structure conservation index 0.27
SVM decision value 0.25
SVM RNA-class probability 0.654986
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18593957 98 - 22224390
CCUCGAAU-AUU--CAGUAUAUACAUAUGUACAUACAUAUGUGUAGUUCUGUUUU--UUGGGUGGUUCGGU---GUGGCCAUGUUGGCCAACCACAACAAAGUCAG
.((((((.-...--(((..(((((((((((....)))))))))))...)))...)--)))))......(((---.(((((.....))))))))............. ( -32.70)
>DroSec_CAF1 55119 95 - 1
CCUCGAAA-AUA--CAGCAUAUA--UAUG----UACAUAUGUGUAGUUCUGCUUU--UUGGGGGGUUCGGUGUUGUGGCCAUGUUGGCCAACCACAACAAAGUCAA
((((.(((-(..--(((..((((--((((----....))))))))...)))..))--)).))))...(..((((((((((.....))))....))))))..).... ( -28.80)
>DroSim_CAF1 53375 95 - 1
CCUCGAAA-AUA--CAGCAUAUA--UAUG----UACAUAUGUGUAGUUCUGCUUU--UUGGGGGGUUCGGUGUUGUGGCCAUGUUGGCCAACCACAACAAAGUCAG
((((.(((-(..--(((..((((--((((----....))))))))...)))..))--)).))))...(..((((((((((.....))))....))))))..).... ( -28.80)
>DroEre_CAF1 43349 78 - 1
CCUCCAAA-----------------CCAG----UUUGUACGUGUAGUUCUGCUUU--UUGGGGA--GCUGU---CUGGCCACGUUGGCCAACCACAACAAAGUCAG
........-----------------....----(((((..((((((((((.(...--..).)))--)))).---.(((((.....)))))..))).)))))..... ( -21.30)
>DroYak_CAF1 46483 87 - 1
UUCCCAAAUAUUUACAA-GUAUA--CGAG----UAUGUAUGUGUAGUUCUGGUUUUUUUGGGGAAGGCGGU----------CGUU--CUGACCACAACAAAGUCAG
((((((((...(((.((-.((((--((..----......)))))).)).)))....))))))))..(.(((----------(...--..)))).)........... ( -19.00)
>consensus
CCUCGAAA_AUA__CAG_AUAUA__UAUG____UACAUAUGUGUAGUUCUGCUUU__UUGGGGGGUUCGGU___GUGGCCAUGUUGGCCAACCACAACAAAGUCAG
................................................(((((((...(((..............(((((.....))))).)))....)))).))) ( -7.16 =  -8.14 +   0.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:06 2006