Locus 7444

Sequence ID X_DroMel_CAF1
Location 18,593,518 – 18,593,641
Length 123
Max. P 0.966407
window12208 window12209

overview

Window 8

Location 18,593,518 – 18,593,623
Length 105
Sequences 3
Columns 105
Reading direction reverse
Mean pairwise identity 91.75
Mean single sequence MFE -29.17
Consensus MFE -26.26
Energy contribution -25.60
Covariance contribution -0.66
Combinations/Pair 1.10
Mean z-score -1.65
Structure conservation index 0.90
SVM decision value 0.07
SVM RNA-class probability 0.570351
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18593518 105 - 22224390
GUGUCUCCCAUCAAUUGGCAUAAGUGGAUUGAUUGGGUAGUCAGAACUGGAUAUCCAACUCUCUUGAGGCCUUCUAGCUAGUAUAACAUUCGGAUAGGAGCACUU
(((.((((.(((((((.((....)).)))))))..(.(((..((((.(((....))).(((....)))...))))..))).)..............))))))).. ( -28.20)
>DroSec_CAF1 54689 105 - 1
GUGUCUCCCAUCGAUUGGCAUAAGUAGAUUGAUUGGGUAGCCAGAACUGGAUACCCAACUCUCUUGAGACCUUCUAGUUAGUACAACAUUCGGAUAUGAGCACUU
(((.(((...((((.((...(((.((((..(.(((((((.(((....))).)))))))(((....))).)..)))).)))......)).))))....)))))).. ( -31.20)
>DroSim_CAF1 52939 105 - 1
GUGUCUCCCAUCAAUUGGCAUAAGUAGAUUGAUUGGGUAGCCAGAACUGGAUACCCAACUCCCAUGAGACCUUCUAGUUAGUAUACAUUUCGGAUAUGAGCACUU
(((.(((..(((...((...(((.((((..(.(((((((.(((....))).)))))))(((....))).)..)))).))).....)).....)))..)))))).. ( -28.10)
>consensus
GUGUCUCCCAUCAAUUGGCAUAAGUAGAUUGAUUGGGUAGCCAGAACUGGAUACCCAACUCUCUUGAGACCUUCUAGUUAGUAUAACAUUCGGAUAUGAGCACUU
(((.(((((.((((((.((....)).))))))(((((((.(((....))).)))))))(((....))).......................))....)))))).. (-26.26 = -25.60 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 18,593,548 – 18,593,641
Length 93
Sequences 3
Columns 93
Reading direction reverse
Mean pairwise identity 94.98
Mean single sequence MFE -27.20
Consensus MFE -26.15
Energy contribution -25.27
Covariance contribution -0.88
Combinations/Pair 1.14
Mean z-score -2.45
Structure conservation index 0.96
SVM decision value 1.59
SVM RNA-class probability 0.966407
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18593548 93 - 22224390
AAUCAGGUCUAUUAUUGUGUGUCUCCCAUCAAUUGGCAUAAGUGGAUUGAUUGGGUAGUCAGAACUGGAUAUCCAACUCUCUUGAGGCCUUCU
....((((((.........((.((((((((((((.((....)).)))))).)))).)).))((..(((....)))..)).....))))))... ( -27.20)
>DroSec_CAF1 54719 93 - 1
AAUCAGGUCUAUUAUUGUGUGUCUCCCAUCGAUUGGCAUAAGUAGAUUGAUUGGGUAGCCAGAACUGGAUACCCAACUCUCUUGAGACCUUCU
....((((((.(((((.((((((...........)))))))))))...(((((((((.(((....))).))))))).)).....))))))... ( -27.40)
>DroSim_CAF1 52969 93 - 1
AAUCAGGUCUAUUAUUGUGUGUCUCCCAUCAAUUGGCAUAAGUAGAUUGAUUGGGUAGCCAGAACUGGAUACCCAACUCCCAUGAGACCUUCU
....((((((.(((((.((((((...........)))))))))))...(((((((((.(((....))).))))))).)).....))))))... ( -27.00)
>consensus
AAUCAGGUCUAUUAUUGUGUGUCUCCCAUCAAUUGGCAUAAGUAGAUUGAUUGGGUAGCCAGAACUGGAUACCCAACUCUCUUGAGACCUUCU
....((((((.(((((.((((((...........)))))))))))...(((((((((.(((....))).))))))).)).....))))))... (-26.15 = -25.27 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:05 2006