Locus 7443

Sequence ID X_DroMel_CAF1
Location 18,585,921 – 18,586,041
Length 120
Max. P 0.912189
window12207

overview

Window 7

Location 18,585,921 – 18,586,041
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 89.08
Mean single sequence MFE -42.04
Consensus MFE -34.54
Energy contribution -34.74
Covariance contribution 0.20
Combinations/Pair 1.17
Mean z-score -1.84
Structure conservation index 0.82
SVM decision value 1.08
SVM RNA-class probability 0.912189
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18585921 120 + 22224390
UCUUUAAUUUUGCUCCGUGUAGCUGCACCAUCCAUUCCGUGGGGACAGAACAGGCUUGUGCCAUGUUUGUACACGGCAAAUUGUGUUUAAACUGGAUGCACUGCUGCACAUGGGAUUUGG
.............(((((((.((.(((.((((((..(((((...(((((.(((((....))).))))))).)))))......((......))))))))...))).)))))))))...... ( -39.10)
>DroSec_CAF1 50843 120 + 1
UCAUUAGUUUUGCUCCGUGUAGCUGCACCAUCCAUUCCGUGGGGACAGAGCAGGCUUGUGCCAUGUUUGUGCACGGCAAAUUGUGUUUAAACUGGAUGCACUGCGGCACAUGGGAGUUGG
...........(((((((((.((((((.((((((....((..(((((.((...(((.((((((....)).)))))))...)).)))))..))))))))...)))))))))).)))))... ( -42.50)
>DroSim_CAF1 48695 120 + 1
UCAUUAAUUUUGCUCCGUGUAGCUGCACCAUCCAUUCCGUGGGGACAGAGCAGGCUUGUGCCAUGUUUGUGCACGGCAAAUUGUGUUUAAACUGGAUGCACUGCGGCACAUGGGAUUUGG
.............(((((((.((((((.((((((....((..(((((.((...(((.((((((....)).)))))))...)).)))))..))))))))...)))))))))))))...... ( -41.40)
>DroEre_CAF1 39555 119 + 1
CUGCUUAUUUCGCUCCGUGCUGCUGCACCAUUCCAUCCAUGGGGACAU-GGAGGCUUGUGCCAUGUUUGUGCACAGCAAAUUGUGUUUAAACUGGAUGCACUGCGGCACGUGGGACUUGG
............((((((((((((((((((.....((((((....)))-)))(((....)))..(((((.((((((....)))))).)))))))).))))..)))))))).)))...... ( -49.60)
>DroYak_CAF1 42444 120 + 1
CUAUUCAUUUUGCUCCGUGUAGCUGCACCAUCAGUUCCAUGGGGACAGAGGAGGCUUGUGCCGUGUUUAUGCACAGCAAAUUGUAUUUAAACUGGAUGCACUGCGCCACAUGGGACUUGG
...(((.((((((((((((.(((((......))))).))))))).)))))))).(..((.((((((....((.(((.....(((((((.....)))))))))).)).)))))).))..). ( -37.60)
>consensus
UCAUUAAUUUUGCUCCGUGUAGCUGCACCAUCCAUUCCGUGGGGACAGAGCAGGCUUGUGCCAUGUUUGUGCACGGCAAAUUGUGUUUAAACUGGAUGCACUGCGGCACAUGGGACUUGG
.............(((((((.((((((.((((((.....((....)).....(((....)))..(((((.((((((....)))))).)))))))))))...)))))))))))))...... (-34.54 = -34.74 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:03 2006