Locus 7441

Sequence ID X_DroMel_CAF1
Location 18,581,330 – 18,581,440
Length 110
Max. P 0.728296
window12204

overview

Window 4

Location 18,581,330 – 18,581,440
Length 110
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 87.36
Mean single sequence MFE -39.64
Consensus MFE -31.10
Energy contribution -30.94
Covariance contribution -0.16
Combinations/Pair 1.14
Mean z-score -1.69
Structure conservation index 0.78
SVM decision value 0.42
SVM RNA-class probability 0.728296
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18581330 110 + 22224390
CGAACCUUCCAAUGCAUUUUGUACAGCUCCUCAUCCUCCGACUGGCCAUCGUUGGCCAGAGCAUAUUUUGCCAUCCUGGAGGUCGUCGGCUGCUCACUGUCCAGAUCCUU
............((.((..((..(((((...(..((((((.(((((((....))))))).(((.....))).....))))))..)..)))))..))..)).))....... ( -34.40)
>DroSec_CAF1 46152 110 + 1
CGGACCUUCCAAUGCAUUUUGUACAGCUCCUCGUCCUCCGACUGGCCAUCGUUGGCCAGAGCAGAUUGUGCCAUCCUGGAGGUCGUCGGCUGCUCACUGUCGCGAUCCUU
.((.....))..(((((..((..(((((...((.((((((.(((((((....))))))).(((.....))).....)))))).))..)))))..))..)).)))...... ( -40.50)
>DroSim_CAF1 43921 110 + 1
CGGACCUUCCAAUGCAUUUUGUACAGCUCCUCGUCCUCCGACUGGCCAUCGUUGGCCAGAGCAGAUUGUGCCAUCCUGGAGGUCGUCGGCUGCUCACUGUCGCGAUCCUU
.((.....))..(((((..((..(((((...((.((((((.(((((((....))))))).(((.....))).....)))))).))..)))))..))..)).)))...... ( -40.50)
>DroEre_CAF1 35397 110 + 1
CGGGCAUUCCAGUGCACGUUGUACAGCUCCUCGUCCUCCGACUGGUCGGCAGUGGCCAGCGCAGAUUGUGCCAUCCUGGAGGUCGUGGGCUGCUCGCCGUUCCGAUCCAU
(((((((....))))(((.((..((((.((.((.((((((..((((((....))))))((((.....)))).....)))))).)).))))))..)).))).)))...... ( -44.30)
>DroYak_CAF1 38120 110 + 1
CGAGCAUUCCAAUGCAAGUUGUAGAGGUCCUCGUCCUCCGACUGGUCGGCGUUGGCCAGCGCAGCUUGUGCCCUCCUGGAGGUCGUCGGCUGCUCACCAUCCCCAUUCUU
.(((((..((...(((((((((...((((..((((..((....))..))))..))))...)))))))))(.((((...)))).)...)).)))))............... ( -38.50)
>consensus
CGGACCUUCCAAUGCAUUUUGUACAGCUCCUCGUCCUCCGACUGGCCAUCGUUGGCCAGAGCAGAUUGUGCCAUCCUGGAGGUCGUCGGCUGCUCACUGUCCCGAUCCUU
.(((........(((.....)))(((((...((.((((((.(((((((....))))))).(((.....))).....)))))).))..))))).............))).. (-31.10 = -30.94 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:01 2006