| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,576,498 – 18,576,604 |
| Length | 106 |
| Max. P | 0.727805 |
| Location | 18,576,498 – 18,576,604 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 70.20 |
| Mean single sequence MFE | -25.22 |
| Consensus MFE | -8.70 |
| Energy contribution | -9.40 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.35 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.727805 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18576498 106 + 22224390 A---G----GAUCGAAAG--GCAGGGAAAUGAAACGCACAUUUUUGAUUUAAUUAUUUCGGUGCCAUUCAUGC---ACGUGCGAAUUCACAUCCCCCCUUCACACCCCCCCCCCUGCA .---(----(.....(((--(..((((..((((.(((((.....(((..........)))((((.......))---)))))))..))))..)))).)))).....))........... ( -24.60) >DroSec_CAF1 41499 95 + 1 A---G----GGCCGAAAG--GCAGGGAAAUGAAAAGCACAUUUUUGAUUUAAUUAUUUCGGUGCCAUUCAUGC---ACGUGCGAAUUCAAGCCCCCC-----------AACCCCUCCA .---(----((((....)--)).(((...((((..((((.....(((..........)))((((.......))---))))))...))))..))).))-----------.......... ( -27.70) >DroSim_CAF1 39197 95 + 1 A---G----GGCCGAAAG--GCAGGGAAAUGAAAAGCACAUUUUUGAUUUAAUUAUUUCGGUGCCAUUCAUGC---ACGUGCGAAUUCAAACCCCCC-----------AACCCCUCCA .---(----((((....)--)).(((...((((..((((.....(((..........)))((((.......))---))))))...))))...)))))-----------.......... ( -26.90) >DroEre_CAF1 31224 81 + 1 G---G----GGCCAGAAG--GCAGGGAAAUGAAAAGCACAUUUUUGAUUUAAUUAUUUCGCUGCCAUUCAUGC---ACGUGCGAA-UCA----------------------CCCUC-- (---(----(....((((--((((.(((((((......((....))......))))))).))))).))).(((---....)))..-...----------------------)))..-- ( -24.50) >DroYak_CAF1 33159 84 + 1 G-CGU----GGCUGGGUG--GCAGGGAAAUGAAAAGCACAUUUUUGAUUUAAUUAUUUCGGUGCCAUUCAUGC---GCGUGCGAAUUCA----------------------CCCUC-- (-(((----(((((((((--(((..(((((((......((....))......)))))))..))))))))).))---.))))).......----------------------.....-- ( -24.90) >DroAna_CAF1 41813 106 + 1 GAUGUGAGAAAUAGAAAGGGUCACGGAAGUGAAAA-CACAUUUUUGAUUUAAUUAUUCUGAUGCCAUUCAUUCCAGGCAUUCAAAUACACAUUCC-CAUUCAAACUCC---------- ((((((.(((.((((((.(.((((....))))...-)...)))))).)))...((((..((((((..........))))))..))))))))))..-............---------- ( -22.70) >consensus A___G____GGCCGAAAG__GCAGGGAAAUGAAAAGCACAUUUUUGAUUUAAUUAUUUCGGUGCCAUUCAUGC___ACGUGCGAAUUCA_A_CCC_C______________CCCUC__ ....................(((.(...(((((..((((.....((((...)))).....))))..)))))......).))).................................... ( -8.70 = -9.40 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:39:00 2006