Locus 744

Sequence ID X_DroMel_CAF1
Location 2,031,739 – 2,031,832
Length 93
Max. P 0.539116
window1205

overview

Window 5

Location 2,031,739 – 2,031,832
Length 93
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 74.73
Mean single sequence MFE -33.05
Consensus MFE -17.30
Energy contribution -17.98
Covariance contribution 0.68
Combinations/Pair 1.14
Mean z-score -1.68
Structure conservation index 0.52
SVM decision value 0.01
SVM RNA-class probability 0.539116
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2031739 93 - 22224390
CGAACUUUCCCAGGCC-CCGCCUAAAUCCCGCAACC--GCCCACCUGU-----G----UGGGCCUUAUCAAUCUGAACUUCCGAUCGGCCCAAAGCCUUGGGUCA
.((........((((.-..)))).............--((((((....-----)----)))))....)).................(((((((....))))))). ( -25.10)
>DroSec_CAF1 4371 100 - 1
CGAACUUUCCCAGGCC-CCGCCUAAAUCCCACAUCCCAGGUUGACAGUGGGCGG----UGGGCCUUAUCAAUCUGAACUUCCGAUCGGGCCAAAGCCUUGGGUCA
........((((((((-(((((((..((((........))..))...)))))))----.)(((((.(((.............))).)))))...))).))))... ( -33.92)
>DroSim_CAF1 2776 100 - 1
CGAACUUUCCCAGGCC-CCGCCCAAAUCCCACAUACCAGGUUGGCGGUGGGCGG----UGGGCCUUAUCAAUCUGAACUUCCGAUCGGGCCAAAGCCUUGGGUCA
........((((((((-(((((((...((.((.......)).))...)))))))----.)(((((.(((.............))).)))))...))).))))... ( -38.32)
>DroEre_CAF1 4294 97 - 1
CGACCUUUCCCAGGCC-CCACCCAACGU----UUACCAA---GGCGGUGGGCGGAACUGUGUCCUAAUCAAUCGGAACUACCGAUAGGAGCAAAGCCAUGGAUCA
.........((((((.-((.((((.(((----((....)---)))).)))).))...(((.(((((.....((((.....))))))))))))..))).))).... ( -31.30)
>DroYak_CAF1 2769 98 - 1
UGAACUUUCCCAGGCCCCCGUCCAACGC----UAUCCAC---GGCGGUGGGCGGAACUUUGUCCUAAUCAAUCGGAACUUCGGAUAGGAGCGAAGCCAUGGGUCA
............((((((((((((.(((----(......---)))).)))))))..((((((((((.((.....)).(....).))))).)))))....))))). ( -36.60)
>consensus
CGAACUUUCCCAGGCC_CCGCCCAAAUCCC_CAUACCAG___GGCGGUGGGCGG____UGGGCCUUAUCAAUCUGAACUUCCGAUCGGACCAAAGCCUUGGGUCA
........(((((((..(((((((.......................)))))))......((.((.(((.............))).)).))...))).))))... (-17.30 = -17.98 +   0.68) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:44 2006