| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,573,215 – 18,573,309 |
| Length | 94 |
| Max. P | 0.902227 |
| Location | 18,573,215 – 18,573,309 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 78.33 |
| Mean single sequence MFE | -38.43 |
| Consensus MFE | -28.14 |
| Energy contribution | -27.82 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.73 |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.902227 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18573215 94 - 22224390 UUCCCGGCGUCCAGAAGUGCAUUCAGGCCACCGAACCGGAGGAGGCGUGCCGCAAUGCUGUCGAGGAGCAGCUGCGCUCCUUGGACAGGGAGUA------------------- (((((...((((.((...(((((((.(((.((........)).))).))....)))))..))(((((((......))))))))))).)))))..------------------- ( -40.10) >DroSim_CAF1 29115 94 - 1 UCCCUGGCGUCCAGAAGUGCAUCCAGGCCACCGAACCAGAGGAGGCUUGCCGCAAUGCUGUCGAGGAGCAGCUGCGCUCCUUGGACAGGGAGUA------------------- ((((((.....(((...(((...((((((.((........)).))))))..)))...)))(((((((((......))))))))).))))))...------------------- ( -43.60) >DroEre_CAF1 27802 94 - 1 UUUCCGGCGUCCAGAAGUGCAUACAGGCCACCGAACCGGAGGAGGCUUCUCACUUUGCUGUCGAGGAGCAGCUGCGCUUCUUGGACAGGGAGUA------------------- (((((...(((((((((((((......((.(((...))).))..(((((((((......)).)))))))...)))))))).))))).)))))..------------------- ( -39.70) >DroWil_CAF1 62332 95 - 1 UCAUCGGUGUACAGAAAUGUAUUCAGGCCACUGAAAUGGAUGAGGCAUGUCGCGAAGCUGUCGAGGAGCAAUUGCGUUCUCUGGAUCGUGAUUAG------------------ (((((.((.((((....))))(((((....))))))).))))).....(((((((.....((.((((((......)))).)).)))))))))...------------------ ( -28.80) >DroYak_CAF1 30037 94 - 1 UUGCCGGCGUCCAGAAGUGCAUACAGGCCACCGAACCGGAGGAGGCCUGUCGCAAUGCUGUCGAGGAGCAGCUGCGCUCCUUGGACAGGGAGUA------------------- ......((.(((.....(((..(((((((.((........)).))))))).)))...((((((((((((......))))))).)))))))))).------------------- ( -41.70) >DroAna_CAF1 37983 113 - 1 UCGUUGGUGUUCAGAAGUGCAUCCAGGCCACCGAACUGGACGAGGCCUGCCGAGAUGCUGUAGAGGAGCAGCUGCGCUCCCUGGACAGGGAUUAAAGGGUCAAAUGGAUCAAG ..(((..(((((((.((((((..((((((.((.....))....)))))).......(((((......)))))))))))..)))))))..))).....((((.....))))... ( -36.70) >consensus UCCCCGGCGUCCAGAAGUGCAUACAGGCCACCGAACCGGAGGAGGCCUGCCGCAAUGCUGUCGAGGAGCAGCUGCGCUCCUUGGACAGGGAGUA___________________ ((((....((((((.((((((..((((((.((........)).)))))).......(((((......)))))))))))..)))))).))))...................... (-28.14 = -27.82 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:59 2006