Locus 7438

Sequence ID X_DroMel_CAF1
Location 18,565,747 – 18,565,847
Length 100
Max. P 0.878627
window12201

overview

Window 1

Location 18,565,747 – 18,565,847
Length 100
Sequences 4
Columns 103
Reading direction forward
Mean pairwise identity 69.05
Mean single sequence MFE -23.98
Consensus MFE -14.61
Energy contribution -14.43
Covariance contribution -0.19
Combinations/Pair 1.08
Mean z-score -1.55
Structure conservation index 0.61
SVM decision value 0.90
SVM RNA-class probability 0.878627
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18565747 100 + 22224390
AUACGGUUGCAAAAACAAAAAAAAAAAACCAUGGCUCGUGCUGGGCAGGCAGUCUAGCAUUCCAAUUCUCC---GUGGACGGUACAUAUGUACAUACAUACAU
...(((((.....)))............((((((...(((((((((.....))))))))).........))---)))).))((((....)))).......... ( -24.30)
>DroSec_CAF1 30895 86 + 1
AUACGGUUGAAAA------AAAACAAAAACAUGGAUCGUGCUGGGCAGGCAGUCUAGCAUUCCAAUUCCCC---GUGGACGGUACACA--------CAUACAU
.((((((((....------....))).....((((..(((((((((.....))))))))))))).....))---)))...........--------....... ( -21.40)
>DroEre_CAF1 21238 91 + 1
AUACGGCCGCACA------UGG--AUGAACAUGGCUCGUGCUGGGCAAACAGUCUAGCAUUCCGAUUCCC----GCGGAGGGAAUAUAGCUACAUGUAUACGG
...(((..((.((------((.--.....))))))..(((((((((.....))))))))).)))((((((----.....)))))).................. ( -30.00)
>DroYak_CAF1 22823 85 + 1
AUACGGUUGCCU--------G-----AAACAUGGCUCGUGCUGGGCAGGCAGUCUAGCAUUCCAAUUCCCCGUCGUAAAUAAAAUAUAG-UACAUACAU----
..((((..(((.--------.-----......)))..(((((((((.....))))))))).........))))................-.........---- ( -20.20)
>consensus
AUACGGUUGCAAA______AAA__AAAAACAUGGCUCGUGCUGGGCAGGCAGUCUAGCAUUCCAAUUCCCC___GUGGACGGAACAUAG_UACAUACAUACAU
...............................(((...(((((((((.....))))))))).)))....................................... (-14.61 = -14.43 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:58 2006