Locus 7437

Sequence ID X_DroMel_CAF1
Location 18,565,172 – 18,565,280
Length 108
Max. P 0.716360
window12200

overview

Window 0

Location 18,565,172 – 18,565,280
Length 108
Sequences 3
Columns 111
Reading direction forward
Mean pairwise identity 82.12
Mean single sequence MFE -47.47
Consensus MFE -31.13
Energy contribution -33.47
Covariance contribution 2.34
Combinations/Pair 1.09
Mean z-score -2.03
Structure conservation index 0.66
SVM decision value 0.39
SVM RNA-class probability 0.716360
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18565172 108 + 22224390
GCCAACUUAUCAGCACUGGUGCUCCAUC---CGGCUGGCCACUUGGUAGGCGUGACACGUCCGAUGGCCUACAUGGGAGUGCGGAUGGAGUGCGGAUGGGGCAUCCGGCUA
(((...............(..(((((((---(((((.(((....))).)))....(((.(((.(((.....))).)))))))))))))))..)(((((...)))))))).. ( -50.80)
>DroSec_CAF1 30334 108 + 1
GCCAACUUAUCAGCACUGGUGCCCCAUC---CGGCUGGCCACUUGGCAGGCGUGACACGUCCGAUGGCCUACAUGGGAGUGCGGAUAGAGUGCGGAUGGGGCAUCCGGCUA
...........(((.(.(((((((((((---(((((.(((....))).)))....((((((((....(((....)))....)))))...)))))))))))))))).)))). ( -51.80)
>DroEre_CAF1 20666 99 + 1
GCCAAGCCAUCAGCACUGAUGCUCCUGGCAUCAACUGGCCACUUGGCAGGCGUGACACGUCCACUGGCCUACAUGGG------------GUGCGGAUGGGGCAUCCGGCCA
((((((...((((...((((((.....)))))).))))...)))))).(((....(((.((((.((.....))))))------------)))((((((...))))))))). ( -39.80)
>consensus
GCCAACUUAUCAGCACUGGUGCUCCAUC___CGGCUGGCCACUUGGCAGGCGUGACACGUCCGAUGGCCUACAUGGGAGUGCGGAU_GAGUGCGGAUGGGGCAUCCGGCUA
............((.(.(((((((((((.....(((.(((....))).))).((.((((((((....(((....)))....)))))...)))))))))))))))).))).. (-31.13 = -33.47 +   2.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:57 2006