Locus 7436

Sequence ID X_DroMel_CAF1
Location 18,558,990 – 18,559,102
Length 112
Max. P 0.997219
window12199

overview

Window 9

Location 18,558,990 – 18,559,102
Length 112
Sequences 3
Columns 112
Reading direction reverse
Mean pairwise identity 80.85
Mean single sequence MFE -42.33
Consensus MFE -29.44
Energy contribution -29.23
Covariance contribution -0.21
Combinations/Pair 1.23
Mean z-score -3.47
Structure conservation index 0.70
SVM decision value 2.82
SVM RNA-class probability 0.997219
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18558990 112 - 22224390
CGUAGCCCCAGAUCCCCAGUGUACUUGGGUGAUGGCCACUUGUCCACAUUGGUCAUCAUCCCAAAGCUUUCGAGGAUGAUUUCAUACUUCGAGACCUUUGGGAAGGGCAAGA
....((((......(((((.....)))))(((((((((..((....)).)))))))))((((((((.(((((((((((....))).)))))))).)))))))).)))).... ( -50.40)
>DroEre_CAF1 15257 104 - 1
CGUAAC-CCAGAUCCCUAGUGUACGUAGGUGAUGGCCACCUGUC-CCACUGAUC-----CCCAGAGCUUUCGAGGAUGAUUUCAUACUUCGAGGCCUUUGGUUAGG-CACGA
(((...-((.((((...((((....((((((.....))))))..-.))))))))-----.((((((.(((((((((((....))).)))))))).))))))...))-.))). ( -34.20)
>DroYak_CAF1 16472 105 - 1
CGUAACCCCAGAUGCCCAGUGCACCUGGCUGAUGGCCACUUGUC-UCACUGGGC-----CCCAAAGCUUUCGAGGAUGAUUUAAUACUUCGAAGCCUUUGGGAGUG-CAGAA
.(((.........((((((((((..((((.....))))..))..-.))))))))-----(((((((.((((((((((......)).)))))))).)))))))..))-).... ( -42.40)
>consensus
CGUAACCCCAGAUCCCCAGUGUACCUGGGUGAUGGCCACUUGUC_ACACUGGUC_____CCCAAAGCUUUCGAGGAUGAUUUCAUACUUCGAGGCCUUUGGGAAGG_CAAGA
...............((((((....((((((.....))))))....)))))).......(((((((.(((((((((((....))).)))))))).))))))).......... (-29.44 = -29.23 +  -0.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:56 2006