Locus 7435

Sequence ID X_DroMel_CAF1
Location 18,551,130 – 18,551,258
Length 128
Max. P 0.993856
window12197 window12198

overview

Window 7

Location 18,551,130 – 18,551,229
Length 99
Sequences 3
Columns 104
Reading direction reverse
Mean pairwise identity 71.66
Mean single sequence MFE -18.00
Consensus MFE -14.26
Energy contribution -14.93
Covariance contribution 0.67
Combinations/Pair 1.12
Mean z-score -1.54
Structure conservation index 0.79
SVM decision value 2.43
SVM RNA-class probability 0.993856
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18551130 99 - 22224390
GUGUUGCAUUAAAAAUAAAGUGCUUAAAAGUAUGCAACACAGAAUUGAUAGUACUGCAUUAGCAUGUUGAUUCAUCUGAAUAUUGAGUUACAUACCCCA-----
(((((((.(((....))).(((((....)))))))))))).((((..(((....(((....))))))..))))..........................----- ( -19.80)
>DroSec_CAF1 15354 104 - 1
GUGUUGCAUUAAAAAUAAAGUGCUUAAAAGUAUGCAAUACAGAAUUGAUAAUCCUGCAUUAGCAUGUUGAUUCAUCUGAAUAUUGAGUUACAUACCACAUUGAA
(((..(((((........)))))......(((((.(((...((((..(((....(((....))))))..)))).((........))))).))))))))...... ( -18.50)
>DroSim_CAF1 16370 76 - 1
GUGUUGCAUUAAAAAUAAAGUGCUAAAAAGUAUGCAAUACAGAAUUGAUU------CAUCUGAAUAUUGAGUUAGUAGUAUC----------------------
(((((((.(((....))).(((((....))))))))))))...(((((((------((.........)))))))))......---------------------- ( -15.70)
>consensus
GUGUUGCAUUAAAAAUAAAGUGCUUAAAAGUAUGCAAUACAGAAUUGAUA_U_CUGCAUUAGCAUGUUGAUUCAUCUGAAUAUUGAGUUACAUACC_CA_____
(((((((.(((....))).(((((....)))))))))))).((((..(((....(((....))))))..))))............................... (-14.26 = -14.93 +   0.67)

alignment

Postscript

secondary structure

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dotplot

Postscript

Window 8

Location 18,551,163 – 18,551,258
Length 95
Sequences 3
Columns 95
Reading direction reverse
Mean pairwise identity 85.26
Mean single sequence MFE -21.67
Consensus MFE -16.36
Energy contribution -16.37
Covariance contribution 0.01
Combinations/Pair 1.12
Mean z-score -2.02
Structure conservation index 0.76
SVM decision value 0.31
SVM RNA-class probability 0.682568
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18551163 95 - 22224390
GCAGUGCCUGGGAAAACUCUAAGACAUUGGUGUUGCAUUAAAAAUAAAGUGCUUAAAAGUAUGCAACACAGAAUUGAUAGUACUGCAUUAGCAUG
(((((((((.(((....))).))......(((((((.(((....))).(((((....))))))))))))..........)))))))......... ( -24.00)
>DroSec_CAF1 15392 95 - 1
GCAGUGCUGGGAAAAUCCCCAAGACGUUGGUGUUGCAUUAAAAAUAAAGUGCUUAAAAGUAUGCAAUACAGAAUUGAUAAUCCUGCAUUAGCAUG
(((((((((((......))))........(((((((.(((....))).(((((....))))))))))))...............))))).))... ( -22.20)
>DroSim_CAF1 16386 89 - 1
GCAGUGCUUGGAAAAUCCCCAAGACGUUGGUGUUGCAUUAAAAAUAAAGUGCUAAAAAGUAUGCAAUACAGAAUUGAUU------CAUCUGAAUA
.((((((((((.......))))).)))))(((((((.(((....))).(((((....)))))))))))).......(((------(....)))). ( -18.80)
>consensus
GCAGUGCUUGGAAAAUCCCCAAGACGUUGGUGUUGCAUUAAAAAUAAAGUGCUUAAAAGUAUGCAAUACAGAAUUGAUA_U_CUGCAUUAGCAUG
.((((((((((.......))))).)))))(((((((.(((....))).(((((....)))))))))))).......................... (-16.36 = -16.37 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:55 2006