| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,538,249 – 18,538,356 |
| Length | 107 |
| Max. P | 0.935040 |
| Location | 18,538,249 – 18,538,356 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 90.80 |
| Mean single sequence MFE | -30.07 |
| Consensus MFE | -26.36 |
| Energy contribution | -26.67 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.66 |
| Structure conservation index | 0.88 |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.935040 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18538249 107 - 22224390 GCGAAAUUAUCGACGGCGCACUGUA-------CAGGCAUAUA--UGUAUGUACAGGUAUAUUUGCCUUUAUUUUUAGUUACUUCGGUACUACACAUUAUUUGUCGUCUUUGAUCCA .....((((..((((((((.(((((-------((.(((....--))).))))))))).................((((.((....))))))..........))))))..))))... ( -27.20) >DroSec_CAF1 3165 116 - 1 GUGAAAUUAUCGACGACGCACUGUACAGUGUACAGGCAUAUGUACAUAUGAACAGGUAUAUUUGCCUUUAUUUUUAGUUACUUCGGUACUACACAUUAUUUGUCGUCUUUGAUCCA .....((((..(((((((((((....)))))..(((((.((((((..........)))))).))))).......((((.((....))))))..........))))))..))))... ( -31.50) >DroSim_CAF1 3216 116 - 1 GCGAAAUUAUCGACGACGCACUGUACAGUGUACAGGCAUAUGUACAUAUGAACAGGUAUAUUUGCCUUUAUUUUUAGUUGCUUCGGUACUACACAUUAUUUGUCGUCUUUGAUCCA .....((((..(((((((((((....)))))..(((((.((((((..........)))))).))))).......((((.((....))))))..........))))))..))))... ( -31.50) >consensus GCGAAAUUAUCGACGACGCACUGUACAGUGUACAGGCAUAUGUACAUAUGAACAGGUAUAUUUGCCUUUAUUUUUAGUUACUUCGGUACUACACAUUAUUUGUCGUCUUUGAUCCA .....((((..((((((((.((((((...))))))))..........(((...(((((....))))).......((((.((....))))))..))).....))))))..))))... (-26.36 = -26.67 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:39 2006