Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 18,536,885 – 18,537,039 |
Length | 154 |
Max. P | 0.808584 |
Location | 18,536,885 – 18,537,005 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.89 |
Mean single sequence MFE | -30.93 |
Consensus MFE | -29.82 |
Energy contribution | -29.60 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -1.89 |
Structure conservation index | 0.96 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.808584 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18536885 120 - 22224390 UUAACGUAUCAGCAUCUCGGCCACAUUUGGCCAACGAAUAAUGCCGGACAGGAUGUGCAGCACUUGAAUGGCAAUUAAAAGCACACUUCAUUUCCAUCAGGAUCACAAAUUAUUCGAGCA ...........((.....(((((....)))))..((((((((((((..((((.((.....))))))..))))....................(((....)))......)))))))).)). ( -31.60) >DroSec_CAF1 1871 120 - 1 UUAACGUAUCAGCAUCUCGGCCACAUUUGGCCAACGAGUAAUGCCGGACAGGAAGUGCAGCACUUGAAUGGCAAUUAAAAGCACACUUCAUUUCCAUCAGGAUCACAAAUUAUUCGAGCA ...........((.....(((((....)))))..((((((((....((...((((((..((..((((.......))))..)).))))))...(((....)))))....)))))))).)). ( -30.60) >DroSim_CAF1 1914 120 - 1 UUAACGUAUCAGCAUCUCGGCCACAUUUGGCCAACGAGUAAUGCCGGACAGGAAGUGCAGCACUUGAAUGGCAAUUAAAAGCACACUUCAUUUCCAUCAGGAUCACAAAUUAUUCGAGCA ...........((.....(((((....)))))..((((((((....((...((((((..((..((((.......))))..)).))))))...(((....)))))....)))))))).)). ( -30.60) >consensus UUAACGUAUCAGCAUCUCGGCCACAUUUGGCCAACGAGUAAUGCCGGACAGGAAGUGCAGCACUUGAAUGGCAAUUAAAAGCACACUUCAUUUCCAUCAGGAUCACAAAUUAUUCGAGCA ...........((.....(((((....)))))..((((((((((.(.((.....)).).)).(((((.(((.(((...(((....))).))).)))))))).......)))))))).)). (-29.82 = -29.60 + -0.22)
Location | 18,536,925 – 18,537,039 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 98.83 |
Mean single sequence MFE | -32.63 |
Consensus MFE | -31.80 |
Energy contribution | -31.80 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.63 |
Structure conservation index | 0.97 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.682001 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18536925 114 - 22224390 GUGAUGUUGAUGGAGAAACCUUUUAGUCCCUUUCUUAACGUAUCAGCAUCUCGGCCACAUUUGGCCAACGAAUAAUGCCGGACAGGAUGUGCAGCACUUGAAUGGCAAUUAAAA (.((((((((((((((((............))))))....)))))))))).)(((((....))))).........(((((..((((.((.....))))))..)))))....... ( -34.30) >DroSec_CAF1 1911 114 - 1 GUGAUGUUGAUGGAGAAACCUUUUAGUCCCUUUCUUAACGUAUCAGCAUCUCGGCCACAUUUGGCCAACGAGUAAUGCCGGACAGGAAGUGCAGCACUUGAAUGGCAAUUAAAA (.((((((((((((((((............))))))....)))))))))).)(((((....))))).........(((((..((((..........))))..)))))....... ( -31.80) >DroSim_CAF1 1954 114 - 1 GUGAUGUUGAUGGAGAAACCUUUUAGUCCCUUUCUUAACGUAUCAGCAUCUCGGCCACAUUUGGCCAACGAGUAAUGCCGGACAGGAAGUGCAGCACUUGAAUGGCAAUUAAAA (.((((((((((((((((............))))))....)))))))))).)(((((....))))).........(((((..((((..........))))..)))))....... ( -31.80) >consensus GUGAUGUUGAUGGAGAAACCUUUUAGUCCCUUUCUUAACGUAUCAGCAUCUCGGCCACAUUUGGCCAACGAGUAAUGCCGGACAGGAAGUGCAGCACUUGAAUGGCAAUUAAAA (.((((((((((((((((............))))))....)))))))))).)(((((....))))).........(((((..((((..........))))..)))))....... (-31.80 = -31.80 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:38 2006