Locus 7425

Sequence ID X_DroMel_CAF1
Location 18,535,199 – 18,535,306
Length 107
Max. P 0.811579
window12174

overview

Window 4

Location 18,535,199 – 18,535,306
Length 107
Sequences 3
Columns 107
Reading direction reverse
Mean pairwise identity 96.26
Mean single sequence MFE -43.43
Consensus MFE -43.41
Energy contribution -42.97
Covariance contribution -0.44
Combinations/Pair 1.06
Mean z-score -1.68
Structure conservation index 1.00
SVM decision value 0.65
SVM RNA-class probability 0.811579
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18535199 107 - 22224390
GCGAAAUAACAAAAUUUAUGCGCGAGGAGGCUGCGCGCCGUCAGGGGGAGGGUUGUUGGCCACCCCAGAGGUGCUUGAACCCCACAUAGCCAGGGUUCGUAGUCCCA
(((..((((......)))).)))..((.(((((((((((.((.((((...(((.....))).)))).)))))))..((((((..........)))))))))))))). ( -45.00)
>DroSec_CAF1 270 107 - 1
GCGGAAUAACUAAAUUUAUGCGCGAGGAGGCUGCGUGCUGUCAGGGGGAGGGUUGUUGGCCACCCCAGAGGUGCUUGAACCCCGCCUAGCCAGGGUUCGUAGUCCCA
(((..((((......)))).)))..((.(((((((..((.((.((((...(((.....))).)))).))))..)..((((((.((...))..)))))))))))))). ( -41.80)
>DroSim_CAF1 294 107 - 1
GCGGAAUAACUAAAUUUAUGCGCGAGGAGGCUGCGUGCCGUCAGGGGGAGGGUUGUUGGCCACCCCAGAGGUGCUUGAACCCCACAUAGCCAGGGUUCGUAGUCCCA
(((..((((......)))).)))..((.(((((((..((.((.((((...(((.....))).)))).))))..)..((((((..........)))))))))))))). ( -43.50)
>consensus
GCGGAAUAACUAAAUUUAUGCGCGAGGAGGCUGCGUGCCGUCAGGGGGAGGGUUGUUGGCCACCCCAGAGGUGCUUGAACCCCACAUAGCCAGGGUUCGUAGUCCCA
(((..((((......)))).)))..((.(((((((((((.((.((((...(((.....))).)))).)))))))..((((((..........)))))))))))))). (-43.41 = -42.97 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:34 2006