Locus 7424

Sequence ID X_DroMel_CAF1
Location 18,531,547 – 18,531,654
Length 107
Max. P 0.802366
window12173

overview

Window 3

Location 18,531,547 – 18,531,654
Length 107
Sequences 3
Columns 115
Reading direction reverse
Mean pairwise identity 66.96
Mean single sequence MFE -24.53
Consensus MFE -14.67
Energy contribution -12.80
Covariance contribution -1.87
Combinations/Pair 1.39
Mean z-score -1.34
Structure conservation index 0.60
SVM decision value 0.62
SVM RNA-class probability 0.802366
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18531547 107 - 22224390
AU--AUAUUAAU-CUUUAAUGAAUACCGUUUUGUUAAUACCCAUUAGGAUGGAAAAAUCUCUGGCAUAUGAUGUUUUCCGUUUCGAUAGGCUCCUUUUGUCUG-----UCAUGAA
..--.(((((((-....((((.....))))..))))))).......((((((((((...((........))..)))))))))).(((((((.......)))))-----))..... ( -21.20)
>DroEre_CAF1 7869 98 - 1
AUGUAUAUUAAU-CUUUAAUGAAC----------------CCAGCAGAGCGGAAAAUCCGUUUGCAUAUGAUGUUUUCCGUUUCGCUGAGCUCCUUUUGUCUGGGUAAUCAUGAA
............-.....((((..----------------.((((..((((((((((.(((......)))..))))))))))..)))).((.((........))))..))))... ( -24.20)
>DroYak_CAF1 9900 111 - 1
AC----AUUCAUCCUUCAAUGAAUUGCGUUAACAAGAGAGCCAUUUGAGUGGAAAAUCCGCUUGCAUAUGAUGCUUUCCGUUUGGAUGAGCUCCUUUAGUUUGCAUAGUCGUAAA
..----............((((..((((.....(((.((((((((..((((((((........((((...))))))))))))..)))).))))))).....))))...))))... ( -28.20)
>consensus
AU__AUAUUAAU_CUUUAAUGAAU__CGUU______A_A_CCAUUAGAGUGGAAAAUCCGCUUGCAUAUGAUGUUUUCCGUUUCGAUGAGCUCCUUUUGUCUG__UA_UCAUGAA
..................((((....................(((..((((((((........((((...))))))))))))..)))((((.......))))......))))... (-14.67 = -12.80 +  -1.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:33 2006