Locus 7423

Sequence ID X_DroMel_CAF1
Location 18,529,807 – 18,529,898
Length 91
Max. P 0.997795
window12172

overview

Window 2

Location 18,529,807 – 18,529,898
Length 91
Sequences 3
Columns 115
Reading direction reverse
Mean pairwise identity 69.16
Mean single sequence MFE -42.33
Consensus MFE -24.63
Energy contribution -27.74
Covariance contribution 3.12
Combinations/Pair 1.14
Mean z-score -2.13
Structure conservation index 0.58
SVM decision value 2.93
SVM RNA-class probability 0.997795
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18529807 91 - 22224390
AUUGGGAGUAGCGUGCUCAGCGGUCAGCGGUCAGUGGCC---------------------AGUGGCCAGUGGUCAGUGGCCAGUGGCCGGUUCUGGCUCGCAUCGCGAC---UAG
........(((((((....((((((((((((((.(((((---------------------(.(((((...))))).)))))).))))))...))))).)))..)))).)---)). ( -47.60)
>DroSec_CAF1 6458 84 - 1
AUUGGGAGUAGCGUGCUCAGUGGCCAGUGGUC----------------------------AGUGGCCAGUGAUCAGUGGCCAGUGGCCGGUUCUGGCUCGCAUCGCGAC---UAG
......(((.((((((.....(((((((((((----------------------------(.((((((.(....).)))))).))))))...)))))).))).))).))---).. ( -39.50)
>DroYak_CAF1 8213 114 - 1
AUUGGGCGCUGCGUGGUCAGCGGUCAGUGGCAAGUGGCAAGUGAUCAGUGGCAAGUGGCAAGUGGCAAGUAGCCAGUGAGCAGUGGCCAGUUCU-UCUCGCAUCGCGACUACUAG
........(((.((((((.((((((((.((.((.((((.(.((.(((.(((((..((.(....).))..).)))).))).)).).)))).))))-.)).).)))))))))))))) ( -39.90)
>consensus
AUUGGGAGUAGCGUGCUCAGCGGUCAGUGGUCAGUGGC______________________AGUGGCCAGUGGUCAGUGGCCAGUGGCCGGUUCUGGCUCGCAUCGCGAC___UAG
.(((.((...(((.((.(((((((((.((((((.((((.................................)))).)))))).))))))...))))).))).)).)))....... (-24.63 = -27.74 +   3.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:32 2006