| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,518,900 – 18,519,005 |
| Length | 105 |
| Max. P | 0.678135 |
| Location | 18,518,900 – 18,519,005 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 64.57 |
| Mean single sequence MFE | -30.05 |
| Consensus MFE | -11.01 |
| Energy contribution | -12.70 |
| Covariance contribution | 1.69 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.37 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.678135 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18518900 105 + 22224390 A-GCUGGAAAUCCCCAGGCACAGGCAUUUCUACAG-AGGGCUGCUUGUAUUGCCCGUAUGGCCAAAAUGCCUGGCCAAAAAGAACAUCGAUAAUAAAUUGACAUUCU .-..(((......)))(((.(((((((((...((.-.((((..........))))...))....))))))))))))....((((..(((((.....)))))..)))) ( -34.40) >DroSec_CAF1 27035 105 + 1 A-GCUGGAAAUCCCCAGGCACAGGUAUUUCUACAU-AGGGCUGCUUUUAUUGCCCGUAUGGCCAAAAUGCCUGGCCAAAAAGCACAUCGAUAAUAAAUUGACAUUCU .-(((((......)).(((.(((((((((...(((-(((((..........)))).))))....))))))))))))....)))...(((((.....)))))...... ( -33.80) >DroEre_CAF1 26849 82 + 1 AGGCUGGAAAUCCCCAGGCGCAGGCAGUUAUCCAG-AGCGCUUCUUGUGCUGCCUGUCC----GCAAU--GGAUUG--------AAUCCAAA----------AUUCU .(.((((......)))).)(((((((((...(.((-((...)))).).)))))))))..----....(--((((..--------.)))))..----------..... ( -26.70) >DroYak_CAF1 27550 88 + 1 A-GCUGGAAAUCCCCAGGCAAUGGCAUUUACCCAAAAGGGCUCCUUGUGCUGCUCGUCC----A---U--CGGGCG--------UAUGAGAAACUAGUUG-UAUUCU .-.((((......))))(((((........(((....)))...((..(((.(((((...----.---.--))))))--------))..))......))))-)..... ( -25.30) >consensus A_GCUGGAAAUCCCCAGGCACAGGCAUUUAUACAG_AGGGCUGCUUGUACUGCCCGUAC____AAAAU__CGGGCC________CAUCGAAAAUAAAUUG_CAUUCU ...((((......))))((.((((((...........((((..........))))............))))))))................................ (-11.01 = -12.70 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:32 2006