Locus 7419

Sequence ID X_DroMel_CAF1
Location 18,508,151 – 18,508,247
Length 96
Max. P 0.991545
window12163 window12164

overview

Window 3

Location 18,508,151 – 18,508,247
Length 96
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 93.92
Mean single sequence MFE -36.60
Consensus MFE -33.31
Energy contribution -33.62
Covariance contribution 0.31
Combinations/Pair 1.03
Mean z-score -3.07
Structure conservation index 0.91
SVM decision value 2.27
SVM RNA-class probability 0.991545
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18508151 96 + 22224390
UUUUCGUGUUGCCUGAGCUCUGCCAGCCAAGAUCAGCUGUGUUUUUGUGGCGGUGGCAGUGGCGGUGGCUCCGCUUAUUAUGUAACACGAAAAGUC
(((((((((((((.(((((((((((((((......((..(......)..))..))))..)))))).))))).)........))))))))))))... ( -38.10)
>DroSec_CAF1 16507 96 + 1
UUUUCGUGUUGCCUGAGCUCUGCCAGCCAAGAUCAGCUGUGUUUUUGUGGCGGUGGCAGUGGCGGUGGCUCCGCUUAUUAUGUAACACGAAAAGUC
(((((((((((((.(((((((((((((((......((..(......)..))..))))..)))))).))))).)........))))))))))))... ( -38.10)
>DroEre_CAF1 16360 90 + 1
UUUUCGUGUUGCCUGAGCUCUGCCAGCCAAGAUCAGCUGUGUUUUUGUGGCGGUA------GCGGUGGCUCUGCUUAUUAUGUAACACGAAAAGUC
((((((((((((.(((((...((((.((...(((.((..(......)..))))).------..))))))...)))))....))))))))))))... ( -34.10)
>DroYak_CAF1 17083 96 + 1
UUUUCGUGUUGCCUGAGCUCUGCCAGCCAAGAUCAGCUGUGUUUUUGUGGCGAUGGCGAUGGCGAUGGCUCUGCUUAUUAUGUAACACGAAAAGUC
((((((((((((.(((((...((((((((...((.((((((((.....))).)))))))))))..))))...)))))....))))))))))))... ( -36.10)
>consensus
UUUUCGUGUUGCCUGAGCUCUGCCAGCCAAGAUCAGCUGUGUUUUUGUGGCGGUGGCAGUGGCGGUGGCUCCGCUUAUUAUGUAACACGAAAAGUC
((((((((((((.(((((...((((((((..(((.((..(......)..))))).....))))..))))...)))))....))))))))))))... (-33.31 = -33.62 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 4

Location 18,508,151 – 18,508,247
Length 96
Sequences 4
Columns 96
Reading direction reverse
Mean pairwise identity 93.92
Mean single sequence MFE -27.36
Consensus MFE -24.01
Energy contribution -24.32
Covariance contribution 0.31
Combinations/Pair 1.04
Mean z-score -2.42
Structure conservation index 0.88
SVM decision value 1.52
SVM RNA-class probability 0.960835
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18508151 96 - 22224390
GACUUUUCGUGUUACAUAAUAAGCGGAGCCACCGCCACUGCCACCGCCACAAAAACACAGCUGAUCUUGGCUGGCAGAGCUCAGGCAACACGAAAA
....(((((((((.........((((.....))))..((((((..((((..................)))))))))).((....))))))))))). ( -30.27)
>DroSec_CAF1 16507 96 - 1
GACUUUUCGUGUUACAUAAUAAGCGGAGCCACCGCCACUGCCACCGCCACAAAAACACAGCUGAUCUUGGCUGGCAGAGCUCAGGCAACACGAAAA
....(((((((((.........((((.....))))..((((((..((((..................)))))))))).((....))))))))))). ( -30.27)
>DroEre_CAF1 16360 90 - 1
GACUUUUCGUGUUACAUAAUAAGCAGAGCCACCGC------UACCGCCACAAAAACACAGCUGAUCUUGGCUGGCAGAGCUCAGGCAACACGAAAA
....(((((((((.............(((....))------)...(((.........(((((......)))))((...))...)))))))))))). ( -23.50)
>DroYak_CAF1 17083 96 - 1
GACUUUUCGUGUUACAUAAUAAGCAGAGCCAUCGCCAUCGCCAUCGCCACAAAAACACAGCUGAUCUUGGCUGGCAGAGCUCAGGCAACACGAAAA
....(((((((((.........((.((((..((((((..((((((((............)).))...)))))))).))))))..))))))))))). ( -25.40)
>consensus
GACUUUUCGUGUUACAUAAUAAGCAGAGCCACCGCCACUGCCACCGCCACAAAAACACAGCUGAUCUUGGCUGGCAGAGCUCAGGCAACACGAAAA
....(((((((((.........((((.....))))..........(((.........(((((......)))))((...))...)))))))))))). (-24.01 = -24.32 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:26 2006