Locus 7418

Sequence ID X_DroMel_CAF1
Location 18,506,214 – 18,506,319
Length 105
Max. P 0.526352
window12162

overview

Window 2

Location 18,506,214 – 18,506,319
Length 105
Sequences 4
Columns 105
Reading direction forward
Mean pairwise identity 84.29
Mean single sequence MFE -22.97
Consensus MFE -13.56
Energy contribution -13.38
Covariance contribution -0.19
Combinations/Pair 1.22
Mean z-score -1.98
Structure conservation index 0.59
SVM decision value -0.01
SVM RNA-class probability 0.526352
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18506214 105 + 22224390
UAUCAUAUCAUUAUGGGUGCACACGUACCUAAACUCGGUAAAAGCCUACCUGUCUAAAAUUUAAAUGAGACACGUUUGGGUGGCAUCAUAAAUAUUUAUAUGUAU
...(((((...(((.(((((.....(((((((((..((((......))))(((((............))))).))))))))))))))....)))...)))))... ( -24.80)
>DroSec_CAF1 14502 99 + 1
UAUGAUAUCAUUUUGGGUGCACACGUACCUAAACUCGGUAAAAGCCUACAUGUAUAAAAUUUAAAUGAGACACGUUUGGGUGGCAUCAUAAAU------AUGUAU
((((((..(..(((((((((....)))))))))..........(((((.((((..................)))).))))))..))))))...------...... ( -21.87)
>DroEre_CAF1 14355 103 + 1
UAUCAUGUCAUUAUGGGUGCACACGUACCUAAGAUUAGUAAAAGCGUACAUGUCUAAAAUUUAAAUGAGGCACGUUUGGGCUGUGACAUAAAUAUUCAUAAAA--
....(((((((..(((((((....))))))).....(((..((((((....((((............))))))))))..))))))))))..............-- ( -24.40)
>DroYak_CAF1 14554 105 + 1
UAUCACAUCAUUAUGGGUGCACACGUACCUAAGCUCAGUAAAAGCCUACAUGUUUAAAAUUUAAAUGAGACACGCUUAGGUUGCAACAUAAAUAUUCAUAUGAAU
..........(((((..((((.....((((((((...(((......))).(((((............))))).)))))))))))).)))))..((((....)))) ( -20.80)
>consensus
UAUCAUAUCAUUAUGGGUGCACACGUACCUAAACUCAGUAAAAGCCUACAUGUCUAAAAUUUAAAUGAGACACGUUUGGGUGGCAACAUAAAUAUUCAUAUGAAU
.............(((((((....)))))))............((((((.(((((............))))).)..)))))........................ (-13.56 = -13.38 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:24 2006