| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,493,069 – 18,493,170 |
| Length | 101 |
| Max. P | 0.688406 |
| Location | 18,493,069 – 18,493,170 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 77.32 |
| Mean single sequence MFE | -34.35 |
| Consensus MFE | -18.06 |
| Energy contribution | -20.17 |
| Covariance contribution | 2.11 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.688406 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18493069 101 + 22224390 GUACGCCAGU---CGCGCAGCAAGGAUCUAGAGAAGCGUAAGCUUAGUCAGAAUCUGGAUAACUUCUCUGUUCGCUUGGGUCACAGCGUCGACCAUGAGGCGCA ((((.((((.---((.((((..((((((((((.((((....))))........)))))))..)))..)))).)).)))))).)).(((((........))))). ( -33.70) >DroVir_CAF1 1365 101 + 1 AUAAAACAGU---CGCGUAGCAAGGAUUUGGAAAAGCGUAAGCUGAGUCAAAAUUUGGAUAACUUUUCGCUGCGCCUGGGACAGAGCAUUGACAUAGAAGUGCA ......(((.---.(((((((..((((((.((..(((....)))...)).))))))(((......))))))))))))).......(((((........))))). ( -29.90) >DroPse_CAF1 1377 104 + 1 CUGCGGCAGUCGUCGCGCAGCAAGGAUCUAGAGAAGCGCAAGCUCAGCCAGAACCUGGAGAACUUCUCGCUGCGUCUCGGCCAGAGUAUUGACUCUGAGGCGCA ..(((.(.((((..(((((((.(((.(((.(...(((....)))...).))).))).(((.....))))))))))..))))((((((....)))))).).))). ( -48.20) >DroGri_CAF1 1381 101 + 1 AUAAAACAGU---CGCGUAGCAAGGAUCUGGAGAAGCGCAAGCUUAGCCAAAACUUGGAUAACUUUUCACUGCGCCUAGGUCAAAGCAUUGACGCAGAAGUUAG ....(((..(---(((((((((((....(((..((((....))))..)))...))))((.......)).))))))....(((((....)))))...)).))).. ( -29.00) >DroMoj_CAF1 1372 101 + 1 AUUAAGCAGU---CGCGCAGCAAGGACUUGGAAAAGCGCAAGCUCAGUCAAAAUUUGGACAACUUUUCGCUGCGGCUGGGACAGAGCAUCGAUGCAGAGGCGCA ......((((---(((((..(((....)))(((((((....))...(((........)))...))))))).))))))).....(.((.((......)).)).). ( -27.80) >DroAna_CAF1 1312 101 + 1 GUGCGCCAGU---CGCGCAGCAAGGACCUGGAGAAGCGUAAGCUGAGCCAGAACAUGGACAACUUUUCGCUGCGACUGGGACAGAGCGUGGACACCGAGGCACA ((((.(((((---(..(((((......((((...(((....)))...)))).....(((......)))))))))))))).......((.(....)))..)))). ( -37.50) >consensus AUAAAACAGU___CGCGCAGCAAGGAUCUGGAGAAGCGCAAGCUCAGCCAAAACUUGGAUAACUUUUCGCUGCGCCUGGGACAGAGCAUUGACACAGAGGCGCA ..............(((((((.(((.(((((...(((....)))...))))).))).((.......)))))))))..........(((((........))))). (-18.06 = -20.17 + 2.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:18 2006