| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,491,503 – 18,491,606 |
| Length | 103 |
| Max. P | 0.582625 |
| Location | 18,491,503 – 18,491,606 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.44 |
| Mean single sequence MFE | -20.48 |
| Consensus MFE | -18.48 |
| Energy contribution | -18.94 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.12 |
| Mean z-score | -0.37 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.582625 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18491503 103 + 22224390 AUA-CUAAUACCUACUGCCACAGAUAAAAGCGCAAACUAGUCUUGUAUUUGUCUUGGAUUGUAUCAUGAUCUGGUCUA----------------UAUAGAUUUUUAGGUACAAUUGCUGU ...-.........((.((.(((((((.(((.((......))))).)))))))....(((((((((..((((((.....----------------..))))))....))))))))))).)) ( -19.50) >DroSec_CAF1 2775 115 + 1 AUAUAUAAUAUCUACUGCCACAGA--AGAGCGUGAACUAGUCUUGUAUUUGUUUUGGGUUGUACCAUGAUCUUGUCU---UAUAUAUUAAUAACUAUAGAUAUUUAGGUACAAUUGCAGU .............(((((.(((((--..((......))..)).)))..........(((((((((.(((...(((((---.................))))).))))))))))))))))) ( -21.53) >DroSim_CAF1 1489 113 + 1 AU-----AUAUCAACUGCCACAGA--AGAGCGUGAACUAGUCUUGUAUUUGUUUUGGGUUGUACCAUGAUCUUGUCUAUAUAUAUAUUAAUAACUAUAGAUUUUUAGGUACCAUUGCAGU ..-----......(((((.(((((--..((......))..)).)))..........(((.(((((.(((....(((((((..(((....)))..)))))))..)))))))).)))))))) ( -20.40) >consensus AUA__UAAUAUCUACUGCCACAGA__AGAGCGUGAACUAGUCUUGUAUUUGUUUUGGGUUGUACCAUGAUCUUGUCUA__UAUAUAUUAAUAACUAUAGAUUUUUAGGUACAAUUGCAGU .............(((((.(((((...((((........).)))...)))))....(((((((((.(((...((((((..................)))))).))))))))))))))))) (-18.48 = -18.94 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:17 2006