Locus 7411

Sequence ID X_DroMel_CAF1
Location 18,489,904 – 18,490,064
Length 160
Max. P 0.942589
window12150 window12151

overview

Window 0

Location 18,489,904 – 18,490,024
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 73.69
Mean single sequence MFE -43.22
Consensus MFE -25.68
Energy contribution -25.65
Covariance contribution -0.03
Combinations/Pair 1.17
Mean z-score -1.85
Structure conservation index 0.59
SVM decision value 1.33
SVM RNA-class probability 0.942589
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18489904 120 - 22224390
UUUGUAAUGUCGCACGGCAACAGCCAGCUGCUUCUCACCUGGCAGCUGAGCAUCUCGCUGUUCCUAUUUUUGAUUACAAUGGUGCGACAGUUGCGUCACGUGCGCAGCCGGCGACUGGGA
........(((((.((((....((((((((((........)))))))).)).....((((((.(.((..(((....)))..))).))))))(((((.....))))))))))))))..... ( -46.20)
>DroPse_CAF1 1185 106 - 1
UUCGUGCUGUCGCAUGGGAACAGCCAGCUGCUGUUUACCUGGCAGCUGAGCGUGUCGAUAAGCCUCUUCCUUAUCACGGUGGUGCGGC---------AAGUGCGGAGUCGACGGC-----
((((..(((((((((.(((...((((((((((........)))))))).))...))((((((.......))))))....).)))))))---------.))..)))).........----- ( -43.90)
>DroGri_CAF1 1119 106 - 1
UUUGUGCUCUCGCAUGGCAACAGCCAGCUGCUUUUCACCUGGCAGCUGAGCGUUGCACUUAGCUUGUUCCUGAUUACGGUUGUUCGGCA---------AUUACGCAAUCGGCGCU-----
...((((....((..((((((.((((((((((........)))))))).))))))).)...)).............((((((..((...---------....)))))))))))).----- ( -36.70)
>DroEre_CAF1 1138 120 - 1
UUUGUGAUGUCGCACGGCAACAGCCAGCUGCUCUUUACCUGGCAGCUGAGCAUCUCGCUGUUCCUAUUUCUGAUUACAGUGGUGCGACAAUUGCGUUAUGUGCGCAACCGGCGGCUGGGA
.......(((((((((....).((((((((((........)))))))).))....((((((..............)))))))))))))).((((((.....))))))((((...)))).. ( -47.24)
>DroAna_CAF1 1126 120 - 1
UUUAUCCUGUCGCACGGCAACAACCAGCUGCUCUUCACCUGGCAACUGAGUGUCUCCUUUUCCCUCUUCCUCAUCACGGUGGUGCGUCAUGUGCGCCAAGUGCGCAGUCGUCGGCAGGGC
....((((((((.(((((.(((..(((.((((........)))).)))..))).....................(((..(((((((.....))))))).)))....))))))))))))). ( -41.40)
>DroPer_CAF1 1179 106 - 1
UUCGUGCUGUCGCAUGGGAACAGCCAGCUGCUGUUUACCUGGCAGCUGAGCGUGUCGAUAAGCCUCUUCCUUAUCACGGUGGUGCGGC---------AAGUGCGGAGUCGACGGC-----
((((..(((((((((.(((...((((((((((........)))))))).))...))((((((.......))))))....).)))))))---------.))..)))).........----- ( -43.90)
>consensus
UUUGUGCUGUCGCACGGCAACAGCCAGCUGCUCUUCACCUGGCAGCUGAGCGUCUCGCUAAGCCUCUUCCUGAUCACGGUGGUGCGGCA________AAGUGCGCAGUCGGCGGC_____
........((((((((....).((((((((((........)))))))).))..............................)))))))................................ (-25.68 = -25.65 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 18,489,944 – 18,490,064
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.72
Mean single sequence MFE -38.30
Consensus MFE -18.47
Energy contribution -19.78
Covariance contribution 1.31
Combinations/Pair 1.27
Mean z-score -1.94
Structure conservation index 0.48
SVM decision value 0.05
SVM RNA-class probability 0.557544
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18489944 120 - 22224390
GGACUACUCGCUGUCGCACCUGCUGGGCCACGCUCUCGCCUUUGUAAUGUCGCACGGCAACAGCCAGCUGCUUCUCACCUGGCAGCUGAGCAUCUCGCUGUUCCUAUUUUUGAUUACAAU
(((......(((((((((..(((.((((.........))))..))).)).)).))))).(((((.(((((((........)))))))(((...)))))))))))................ ( -35.50)
>DroVir_CAF1 1118 120 - 1
GGACUACUCGCUCUCACAUUUGCUGGGCAAUUGCCUGGCCUUUGUGAUCUCGCACGGCAACACCCAACUGCUCUUCACCUGGCAGUUGAGCGUUGCCCUCAGCCUGUUCCUAAUAACGAU
(((..((..(((.(((((...((..(((....)))..))...)))))........((((((.(.((((((((........)))))))).).))))))...)))..))))).......... ( -45.40)
>DroPse_CAF1 1211 120 - 1
GGACUACUCGCUGUCGCACCUGCUGGGCAACGCGAUAGCCUUCGUGCUGUCGCAUGGGAACAGCCAGCUGCUGUUUACCUGGCAGCUGAGCGUGUCGAUAAGCCUCUUCCUUAUCACGGU
.(((..(((((((((((.((....))))...((((((((......))))))))..(((((((((.....))))))).)).)))))).)))...)))((((((.......))))))..... ( -48.20)
>DroGri_CAF1 1145 120 - 1
GGAUUACUCACUGUCACACCUGCUGGGCAAUUGCCUGGCCUUUGUGCUCUCGCAUGGCAACAGCCAGCUGCUUUUCACCUGGCAGCUGAGCGUUGCACUUAGCUUGUUCCUGAUUACGGU
(((.........(.((((...((..(((....)))..))...)))))....((..((((((.((((((((((........)))))))).))))))).)...))....))).......... ( -43.00)
>DroMoj_CAF1 1187 120 - 1
GGACUAUUCGCUCUCGCAUCUGCUGGGCAACGCCCUGGCCUUUCUGAUCUCACACGGCAACACGCAGUUGCUCUUCACCUGGCAACUGAGCCUGGCCCUCAGCAUGUUCAUGAUUACGCU
((((.....((....))...(((((((....(((..(((................(....)...((((((((........)))))))).))).))).))))))).))))........... ( -35.10)
>DroAna_CAF1 1166 120 - 1
UGACUACUCCCUCUCGCACAUACUGGCCCAUGCCCUGGCCUUUAUCCUGUCGCACGGCAACAACCAGCUGCUCUUCACCUGGCAACUGAGUGUCUCCUUUUCCCUCUUCCUCAUCACGGU
.........((....(((((((..((((........))))..))...))).))..((..(((..(((.((((........)))).)))..)))..))....................)). ( -22.60)
>consensus
GGACUACUCGCUCUCGCACCUGCUGGGCAACGCCCUGGCCUUUGUGAUCUCGCACGGCAACAGCCAGCUGCUCUUCACCUGGCAGCUGAGCGUCGCCCUCAGCCUGUUCCUGAUUACGGU
..............((((...((((((......))))))...))))....(((..(....)...((((((((........)))))))).)))............................ (-18.47 = -19.78 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:15 2006