| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,472,507 – 18,472,627 |
| Length | 120 |
| Max. P | 0.553238 |
| Location | 18,472,507 – 18,472,627 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.97 |
| Mean single sequence MFE | -42.55 |
| Consensus MFE | -24.47 |
| Energy contribution | -24.78 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.553238 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18472507 120 + 22224390 CUUCUCUUCCUCCAGCUCUCGCUGCAUAGCCUCCUCUUCUUCGCGCAGGCGCUCCUCAUUCAGACGCAGCUCUGCCUCCAAGCGUGCAUCCUCCUCGGCACGCAGUUGCCGUGCAGCCUC ....................((((((..((..(...........(((((.((((.((.....)).).))))))))......((((((..........)))))).)..))..))))))... ( -34.40) >DroVir_CAF1 1713 119 + 1 -UGCUGUAAUUCCAGCUCCUGUUGCAGCGCCGCCUCCUCUUCGCGCAGCCGCUGCUCGUUCAGACGCAGCUCGGCCUCCAGGCGCGCAUCUUCUUCUGCGCGUCGCUGACGUGCAGCUUC -.((((((....((((.((.(((((.(((..(......)..)))))))).(((((((.....)).)))))..))......((((((((........))))))))))))...))))))... ( -47.00) >DroPse_CAF1 4427 118 + 1 --GCUCAUCCUCCAGCUCCUGCCUGAGGGCCGCCUCUUCUACGCGCAGCCGCUGCUCAUUCAGCCGCAGCUCUGCCUCCAGGCGGGCGUCUUCCUCGGCUCGCUGCUGGCGCGCUUCCUC --((...(((((..((....))..)))))..)).........((((.(((((((......)))).(((((.(((((....)))))(.(((......))).)))))).)))))))...... ( -44.80) >DroGri_CAF1 1940 119 + 1 -CGCUGCAGCUGCAACUCCUGCUGCAUGGCCGCCUCCUCCUCGCGCAGCCGCUGCUCAUUCAAACGCAGCUCGGCCUCCAGCCGGGCAUCCUCCUCGGCGCGCAGCUGACGUGCUGCCUC -.((((((((..........)))))).(((((((........).))....(((((..........)))))..))))....((((((.......))))))))(((((......)))))... ( -45.50) >DroAna_CAF1 1135 112 + 1 CUCCUCCUCCUCCAGUUCACGCUGCAGGGCAGCCUCCUCUUCGCGCAGACGCUCCUCGUUCAGCCGGAGCUCCGCCUCCAGGCGGGCAUCCUCCUCGGCCCGCUGCUGACGG-------- .....((.(((.((((....)))).)))(((((.........(((....)))..........((((((((.(((((....))))))).))).....)))..)))))....))-------- ( -37.80) >DroPer_CAF1 4407 118 + 1 --GCUCAUCCUCCAGCUCCUGCCUGAGGGCCGCCUCCUCCACGCGCAGCCGCUGCUCAUUCAGCCGCAGCUCUGCCUCCAGGCGGGCGUCUUCCUCGGCGCGCUGUUGACGCGCUUCCUC --(((((.....((((..(((((((..(((.((.........))((.((.((((......)))).)).))...)))..)))))))(((((......))))))))).))).))........ ( -45.80) >consensus _UGCUCAUCCUCCAGCUCCUGCUGCAGGGCCGCCUCCUCUUCGCGCAGCCGCUGCUCAUUCAGACGCAGCUCUGCCUCCAGGCGGGCAUCCUCCUCGGCGCGCUGCUGACGUGCUGCCUC ....................(((....)))...........((((((((.(((((..........)))))..........(((((((..........))))))))))).))))....... (-24.47 = -24.78 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:07 2006