Locus 7404

Sequence ID X_DroMel_CAF1
Location 18,456,562 – 18,456,652
Length 90
Max. P 0.779607
window12136

overview

Window 6

Location 18,456,562 – 18,456,652
Length 90
Sequences 3
Columns 90
Reading direction forward
Mean pairwise identity 95.45
Mean single sequence MFE -14.30
Consensus MFE -14.30
Energy contribution -14.30
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.60
Structure conservation index 1.00
SVM decision value 0.55
SVM RNA-class probability 0.779607
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18456562 90 + 22224390
AUCCCCGCCAGCGUUACCCAUUGCCAUUCCCAUUCCCAUUCGACAUUCUCCAUUCUUCAUUCAAGUGCCGCACUCGUGGCGCUAUUUUUG
..........(((........))).......................................((((((((....))))))))....... ( -14.30)
>DroSec_CAF1 335 84 + 1
AUCCCCGCCAGCGUUACCCAUUGCCAUUC------CCAUUCGACAUUCUCCAUUCUUCAUUCAAGUGCCGCACUCGUGGCGCUAUUUUUG
..........(((........))).....------............................((((((((....))))))))....... ( -14.30)
>DroSim_CAF1 678 84 + 1
AUCCCCGCCAGCGUUACCCAUUGCCAUUC------CCAUUCGACAUUCUCCAUUCUUCAUUCAAGUGCCGCACUCGUGGCGCUAUUUUUG
..........(((........))).....------............................((((((((....))))))))....... ( -14.30)
>consensus
AUCCCCGCCAGCGUUACCCAUUGCCAUUC______CCAUUCGACAUUCUCCAUUCUUCAUUCAAGUGCCGCACUCGUGGCGCUAUUUUUG
..........(((........))).......................................((((((((....))))))))....... (-14.30 = -14.30 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:38:02 2006