Locus 7401

Sequence ID X_DroMel_CAF1
Location 18,440,463 – 18,440,565
Length 102
Max. P 0.983520
window12128

overview

Window 8

Location 18,440,463 – 18,440,565
Length 102
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 80.75
Mean single sequence MFE -29.90
Consensus MFE -19.80
Energy contribution -20.18
Covariance contribution 0.38
Combinations/Pair 1.09
Mean z-score -2.58
Structure conservation index 0.66
SVM decision value 1.95
SVM RNA-class probability 0.983520
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18440463 102 - 22224390
CACACUGCGAUUGUCUUCCCAUUGAAUAGGCCAAA--UCCACCCCUC--GGAUGCCGGUCAUUCCAUAUUCAUAUAACGAUGUGGCAAUGGCAA--------------AUCGCGGAUUUA
....((((((((......((((((....((((..(--(((.......--))))...))))...(((((((........)))))))))))))..)--------------)))))))..... ( -32.50)
>DroSec_CAF1 6658 97 - 1
CACACUGCGGUUGUCUUUCCAUU-----GGCCAAA--UCCACCCCUC--GGAUGCCGGUCAUUCCAUAUUCAUAUAACGAUGUGGCAAUGGCAA--------------AUCGCGGAUUUA
....((((((((..........(-----(((...(--(((.......--))))))))(((((((((((((........))))))).)))))).)--------------)))))))..... ( -31.00)
>DroEre_CAF1 6336 101 - 1
CACACUGCGGUUGUCUUG-CACUGAAAUGCCCAAA--UCCACCCCCC--GAAUGCCGGCCAUUCCAUAUUCAUAUAACGAUGUGCGAAUGGCAC--------------AUCGCGGACUUA
....(((((((.((...(-((......))).....--..........--........(((((((((((((........)))))).)))))))))--------------)))))))..... ( -26.40)
>DroYak_CAF1 4584 119 - 1
CACACUGCGGUUGUCUUC-CAUUGAAAUGGCCAAAAAGCAACCCCUUAAAAAUGCCGGUCAUUCCAUAUUCAUAUAACGAUGUGCGAAUGGCAAAUCGCAAAUCGCAAAUCGCGGACUUA
....(((((((((.((((-(((....)))).....)))))))).........(((..(((((((((((((........)))))).))))))).....)))...........))))..... ( -29.70)
>consensus
CACACUGCGGUUGUCUUC_CAUUGAAAUGGCCAAA__UCCACCCCUC__GAAUGCCGGUCAUUCCAUAUUCAUAUAACGAUGUGCCAAUGGCAA______________AUCGCGGACUUA
....(((((((.................(((......................))).(((((((((((((........)))))).)))))))................)))))))..... (-19.80 = -20.18 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:55 2006