Locus 7400

Sequence ID X_DroMel_CAF1
Location 18,439,779 – 18,439,881
Length 102
Max. P 0.910401
window12127

overview

Window 7

Location 18,439,779 – 18,439,881
Length 102
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 82.89
Mean single sequence MFE -26.05
Consensus MFE -18.86
Energy contribution -19.18
Covariance contribution 0.31
Combinations/Pair 1.04
Mean z-score -2.12
Structure conservation index 0.72
SVM decision value 1.07
SVM RNA-class probability 0.910401
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 18439779 102 - 22224390
UAUAAAAACAUUAAGUGCCGGCCAACAAAUGUAAUUAAACGCGUUAAACAAUUGCAGUGGGCGCGUAAUGGCAGAAAAAUGCAUUUGCCGACUGUCCAC----------CAC--------
.........((((.(((((.((...(((.(((..((((.....))))))).)))..)).))))).))))((((((........))))))..........----------...-------- ( -21.20)
>DroSec_CAF1 5981 108 - 1
UAUAAAAACAUUAAGUGCCGGCCAACAAAUGUAAUUAAACGCGUUAAACAAUUGCAGUGGGCGCGUAAUGGCAGAAAAAUGCAUUUGCCCACUGCCCAC----------CACUCCCGG--
.................((((......(((((........)))))........((((((((((...((((.((......))))))))))))))))....----------.....))))-- ( -28.10)
>DroEre_CAF1 5658 92 - 1
UAUAAAAACAUUAAGUGCCGGCCAACAAAUGUAAUUAAACGCGUUAAACAAUUGCAGCGGGCGAGUAAUGGCAGAAAAAUGCAUUCGCCCAA----------------------------
........(((((..((((.((...(((.(((..((((.....))))))).)))..)).))))..)))))(((......)))..........---------------------------- ( -20.00)
>DroYak_CAF1 3820 120 - 1
UAUAAAAACAUUAAGUGCCGGCCAACAAAUGUAAUUAAACGCGUUAAACAAUUGCAGUGGGCGAGUAAUGGCAGAAAAAUGCAGUCGCCCACUGUCCACUGGCCAAAACCACACGCAAUU
..............(((..(((((...(((((........)))))........(((((((((((.(....(((......)))).)))))))))))....))))).....)))........ ( -34.90)
>consensus
UAUAAAAACAUUAAGUGCCGGCCAACAAAUGUAAUUAAACGCGUUAAACAAUUGCAGUGGGCGAGUAAUGGCAGAAAAAUGCAUUCGCCCACUGUCCAC__________CAC________
........(((((.(((((.((...(((.(((..((((.....))))))).)))..)).))))).)))))(((......)))...................................... (-18.86 = -19.18 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:54 2006