Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,006,305 – 2,006,495 |
Length | 190 |
Max. P | 0.869589 |
Location | 2,006,305 – 2,006,421 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 95.69 |
Mean single sequence MFE | -16.43 |
Consensus MFE | -15.37 |
Energy contribution | -15.62 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.85 |
Structure conservation index | 0.94 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.869589 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2006305 116 + 22224390 UCAGUGUUAGUUUUAUAAGUAGAGUUUCUUUAGCUUACGUUUAGGCAAUAAAAUAACUUUAUUUCCCACAUCUAAUCUAGAAUUUUCCUCUCUAACUCUCUCUUUACACAUGUCUA ..((.(((((......((((((((((..(((((((((....)))))..))))..))))))))))......((((...))))..........))))).))................. ( -16.20) >DroSec_CAF1 7127 116 + 1 UCAGUGUUAGUUUUAUAAGUAGAGUUUCUUUAGCUUACGUUUAGGCAAUAAAAUAACUUUAUUUCCCUCAUCUAAUCUAGAAUUUUCCUCUCUAUCUCUCUCUUUACACAUGUCUA ...(((((((......((((((((((..(((((((((....)))))..))))..)))))))))).......)))...((((.........))))...........))))....... ( -15.62) >DroSim_CAF1 6033 116 + 1 UCAGUGUUAGUUUUAUAAGUAGAGUUUCUUUAGCUUACGUUUAGGCAAUAAAAUAACUUUAUUUCCCUCAUCUAAUCUAGAAUUUUCCUCUCUAUCUCUCUCUUUACACAUGUCUA ...(((((((......((((((((((..(((((((((....)))))..))))..)))))))))).......)))...((((.........))))...........))))....... ( -15.62) >DroEre_CAF1 7155 116 + 1 UCAGUGUUAGUUUUAUAAGUAGAGUUUCUUUAGCUUACAUUUAGGCAAUAAAAUAACUUUAUUCUCCUCAUCUAAUCUAGAGUUUCUUUCUCUAUCUCUCUCUUUACACUUGUCUA ..((((((((.......(((((((((..(((((((((....)))))..))))..)))))))))........)))...(((((.......)))))...........)))))...... ( -18.26) >consensus UCAGUGUUAGUUUUAUAAGUAGAGUUUCUUUAGCUUACGUUUAGGCAAUAAAAUAACUUUAUUUCCCUCAUCUAAUCUAGAAUUUUCCUCUCUAUCUCUCUCUUUACACAUGUCUA ...(((((((......((((((((((..(((((((((....)))))..))))..)))))))))).......)))...((((.........))))...........))))....... (-15.37 = -15.62 + 0.25)
Location | 2,006,385 – 2,006,495 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 95.45 |
Mean single sequence MFE | -22.08 |
Consensus MFE | -20.61 |
Energy contribution | -20.30 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.11 |
Mean z-score | -1.41 |
Structure conservation index | 0.93 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.530193 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2006385 110 - 22224390 AUUAAACCUUUUUUUUAUUGAUUGUAAAACAAGCGCUCUUAGCAAAAACGCUGCAGCAGAAAGAGCGAGAGCGAUAGACAUGUGUAAAGAGAGAGUUAGAGAGGAAAAUU ....(((.((((((((((....(((........((((((((((......)))...((.......)))))))))....)))...)))))))))).)))............. ( -22.30) >DroSec_CAF1 7207 110 - 1 AUUAAACCUUUUUUUUAUUGAUUGUAAAACAAGCGCUCUUAGCAAAAACGCUGCAGCAGAAAGAGCGAGAGCGAUAGACAUGUGUAAAGAGAGAGAUAGAGAGGAAAAUU ......(((((((....((..((.....(((..((((((((((......)))...((.......))))))))).......))).....))..))...)))))))...... ( -21.20) >DroSim_CAF1 6113 110 - 1 AUUAAACCUUUUUUUUAUUGAUUGUAAAACAAGCGCUCUUAGCAAAAACGCUGCAGCAGAAAGAGCGAGAGCGAUAGACAUGUGUAAAGAGAGAGAUAGAGAGGAAAAUU ......(((((((....((..((.....(((..((((((((((......)))...((.......))))))))).......))).....))..))...)))))))...... ( -21.20) >DroEre_CAF1 7235 109 - 1 AUUAAA-CUUUUUUUUAUUCAUUGUAAAACAAGCGCUCUUAGCAAAAACGCUGCAGCUGGAAGAGCGAGAGCGAUAGACAAGUGUAAAGAGAGAGAUAGAGAAAGAAACU ......-(((((((((.....((((........((((((((((......)))...(((.....))))))))))....)))).....)))))))))............... ( -23.60) >consensus AUUAAACCUUUUUUUUAUUGAUUGUAAAACAAGCGCUCUUAGCAAAAACGCUGCAGCAGAAAGAGCGAGAGCGAUAGACAUGUGUAAAGAGAGAGAUAGAGAGGAAAAUU ........(((((((((((..((.....(((..((((((((((......)))...((.......))))))))).........))).....))..)))))))))))..... (-20.61 = -20.30 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:52:38 2006