Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 320,588 – 320,682 |
Length | 94 |
Max. P | 0.999913 |
Location | 320,588 – 320,682 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 90.66 |
Mean single sequence MFE | -21.09 |
Consensus MFE | -16.46 |
Energy contribution | -16.62 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -2.86 |
Structure conservation index | 0.78 |
SVM decision value | 2.20 |
SVM RNA-class probability | 0.990102 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 320588 94 + 22224390 UUUGCACGAUAUUUACUCACCCUCACUU------UUACUUGGCGCUAUACUCUCCUGCCAAUUGUGCUCAGGACUUCAUUGUCCUGUGCUUACGUGUUCU ...(((((....................------....((((((...........))))))....((.((((((......)))))).))...)))))... ( -24.50) >DroSec_CAF1 63566 94 + 1 UUUGCAGGAUAUUUUGUCACCCUCACUC------UUACUUGGCGCUAUACUCUCCUGCCAAUUGUACCCAGGACUUCAUUGUCCUGCGCUUACGUAUUCU ...(((((((((..(((((.........------.....)))))..)))...)))))).....(((.(((((((......)))))).)..)))....... ( -21.94) >DroSim_CAF1 84217 94 + 1 UUUGCAGGAUAUUUUGUCACCCUCACUC------UUACUCGGCGCUAUACUCUCCUGCCAAUUGUACCCAGGACUUCAUUGUCCUGCGCUUACGUAUUCU ...(((((((((..((((..........------......))))..)))...)))))).....(((.(((((((......)))))).)..)))....... ( -20.99) >DroEre_CAF1 64039 94 + 1 UUUGCAGGAUAUUUUCUCACCCUCACUC------UUACUUGGCGCUACACUCUCCUGCCAAUUGUCCCCAGGACUUCAUUGUCCUGUGCCUACGUGUUCU ...((((((((.................------....((((((...........))))))..((((...)))).....))))))))............. ( -19.20) >DroYak_CAF1 84553 100 + 1 UUUGCAGGAUAUUUUCCCACCCUCACUCUUACUCUUACUUGGCGCUAUGCUCUCCUGCCAAUUGUCCCCAGGACCUCAUUGUCCUGUGCUUACGUGUUCU ...((((((((...........................((((((...........))))))..((((...)))).....))))))))............. ( -18.80) >consensus UUUGCAGGAUAUUUUCUCACCCUCACUC______UUACUUGGCGCUAUACUCUCCUGCCAAUUGUACCCAGGACUUCAUUGUCCUGUGCUUACGUGUUCU .....(((((((..........................((((((...........)))))).......((((((......)))))).......))))))) (-16.46 = -16.62 + 0.16)
Location | 320,588 – 320,682 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 90.66 |
Mean single sequence MFE | -26.54 |
Consensus MFE | -23.92 |
Energy contribution | -24.44 |
Covariance contribution | 0.52 |
Combinations/Pair | 1.05 |
Mean z-score | -3.02 |
Structure conservation index | 0.90 |
SVM decision value | 4.52 |
SVM RNA-class probability | 0.999913 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 320588 94 - 22224390 AGAACACGUAAGCACAGGACAAUGAAGUCCUGAGCACAAUUGGCAGGAGAGUAUAGCGCCAAGUAA------AAGUGAGGGUGAGUAAAUAUCGUGCAAA ...........((.((((((......)))))).)).......(((.((........((((...((.------...))..))))........)).)))... ( -24.29) >DroSec_CAF1 63566 94 - 1 AGAAUACGUAAGCGCAGGACAAUGAAGUCCUGGGUACAAUUGGCAGGAGAGUAUAGCGCCAAGUAA------GAGUGAGGGUGACAAAAUAUCCUGCAAA ...........((.((((((......)))))).)).......((((((........((((...((.------...))..))))........))))))... ( -28.49) >DroSim_CAF1 84217 94 - 1 AGAAUACGUAAGCGCAGGACAAUGAAGUCCUGGGUACAAUUGGCAGGAGAGUAUAGCGCCGAGUAA------GAGUGAGGGUGACAAAAUAUCCUGCAAA ...........((.((((((......)))))).)).......((((((........((((......------.......))))........))))))... ( -28.41) >DroEre_CAF1 64039 94 - 1 AGAACACGUAGGCACAGGACAAUGAAGUCCUGGGGACAAUUGGCAGGAGAGUGUAGCGCCAAGUAA------GAGUGAGGGUGAGAAAAUAUCCUGCAAA .......((.....((((((......))))))...)).....((((((.....(..((((...((.------...))..))))..).....))))))... ( -26.30) >DroYak_CAF1 84553 100 - 1 AGAACACGUAAGCACAGGACAAUGAGGUCCUGGGGACAAUUGGCAGGAGAGCAUAGCGCCAAGUAAGAGUAAGAGUGAGGGUGGGAAAAUAUCCUGCAAA ....(((.((..(.((((((......)))))).......(((((.............)))))....)..))...)))...(..(((.....)))..)... ( -25.22) >consensus AGAACACGUAAGCACAGGACAAUGAAGUCCUGGGGACAAUUGGCAGGAGAGUAUAGCGCCAAGUAA______GAGUGAGGGUGAGAAAAUAUCCUGCAAA .......((..((.((((((......)))))).)))).....((((((........((((...................))))........))))))... (-23.92 = -24.44 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:12 2006