| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 18,437,515 – 18,437,623 |
| Length | 108 |
| Max. P | 0.857444 |
| Location | 18,437,515 – 18,437,623 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 91.58 |
| Mean single sequence MFE | -30.56 |
| Consensus MFE | -25.66 |
| Energy contribution | -25.98 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.81 |
| SVM RNA-class probability | 0.857444 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 18437515 108 + 22224390 CAACAAUUUUAAUAUAAUCAGAAUGCGAAUAGACCAUUCCAAGACGUUGUCCUGGCCA-CUGGUCAGUCUCCU-----------UUGGCUAUUGUCAUGGGGGCAGCAAAUUAUGUUAAG ........((((((((((.....(((.....(((((..(((.(((...))).)))...-.))))).((((((.-----------.((((....)))).)))))).))).)))))))))). ( -32.50) >DroSec_CAF1 3641 108 + 1 CAACAAUUUUAAUAUAAUCAGAAUGCGAAUAGACCAUUCCAAGACGUUGUCCUGGCCA-CUGGUCAGUCUCCU-----------UUGGCUAUUGUCAUGGGGGCAGCAAAUUAUGUUAAG ........((((((((((.....(((.....(((((..(((.(((...))).)))...-.))))).((((((.-----------.((((....)))).)))))).))).)))))))))). ( -32.50) >DroSim_CAF1 1954 109 + 1 CAACAAUUUGAAUAUAAUCAGAAUGCGAAUAGACCAUUCCAAGACGUUGUCCUGGCCAUCUCGUCAGUCUCCU-----------UUGGCUAUUGUCAUGGGGGCAGCAAAUUGGGUUAAG ...((.(((((......))))).))............(((((...(((((((((((......)))))...(((-----------.((((....)))).)))))))))...)))))..... ( -26.70) >DroEre_CAF1 3537 108 + 1 CAACAAUUUUAAUAUAAUCAGAAUGCGAAUGGGCCAUUCCAAGACGUUGUCCUGGCCA-CUGGUCAGUCUGCU-----------UGGGCCAUUGUCAUGGGGGCAGCAAAUUAUGUUGAG ........((((((((((.....(((......(((...(((.((((..((((.(((.(-((....)))..)))-----------.))))...)))).))).))).))).)))))))))). ( -29.80) >DroYak_CAF1 1034 119 + 1 CAACAAUUUUAAUAUAAUCAGAAUGCGAAUGGACCAUUCCAAGACGUUGUCCUGGCCA-CUGGUCAGUCUCCUCAGUCUCCAACUAGGCCAUUGUCAUGGGGGCAGCAAAUUAUGUUAAG ........((((((((((.....(((.....(((((..(((.(((...))).)))...-.))))).((((((.((((..((.....))..))))....)))))).))).)))))))))). ( -31.30) >consensus CAACAAUUUUAAUAUAAUCAGAAUGCGAAUAGACCAUUCCAAGACGUUGUCCUGGCCA_CUGGUCAGUCUCCU___________UUGGCUAUUGUCAUGGGGGCAGCAAAUUAUGUUAAG ........((((((((((..(((((.(......))))))......((((((((((((....)))).....................(((....)))...))))))))..)))))))))). (-25.66 = -25.98 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:37:53 2006